miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 3' -58.3 NC_001806.1 + 719 0.7 0.5944
Target:  5'- --cGGCCCCAgcCCucCCCGG-CGCGUCc -3'
miRNA:   3'- uucUUGGGGU--GGuuGGGCCuGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 3365 0.72 0.476156
Target:  5'- -cGGGCCCCgGCCAGCCCcgGGACGgccgccaggucgcCGUCg -3'
miRNA:   3'- uuCUUGGGG-UGGUUGGG--CCUGC-------------GCAG- -5'
5628 3' -58.3 NC_001806.1 + 3463 0.67 0.75397
Target:  5'- ---cACgCgGCCGGCCUGGGCGCGg- -3'
miRNA:   3'- uucuUGgGgUGGUUGGGCCUGCGCag -5'
5628 3' -58.3 NC_001806.1 + 3582 0.67 0.75397
Target:  5'- cGAGGAUCCCcgcggcGCCGuACCCGGcgggcaccGCGCGcUCg -3'
miRNA:   3'- -UUCUUGGGG------UGGU-UGGGCC--------UGCGC-AG- -5'
5628 3' -58.3 NC_001806.1 + 4124 0.72 0.486475
Target:  5'- cGGGcGCCCC-CCAgagGCCCGGGCGgcUGUCg -3'
miRNA:   3'- -UUCuUGGGGuGGU---UGGGCCUGC--GCAG- -5'
5628 3' -58.3 NC_001806.1 + 4288 0.66 0.781057
Target:  5'- cGGGGcuGCCCgGCCGugaagcgGCCC-GugGCGUCg -3'
miRNA:   3'- -UUCU--UGGGgUGGU-------UGGGcCugCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 4379 0.67 0.762482
Target:  5'- cGGGggUCCuCGCCGccGCCCGGggcuuggGCGCGg- -3'
miRNA:   3'- -UUCuuGGG-GUGGU--UGGGCC-------UGCGCag -5'
5628 3' -58.3 NC_001806.1 + 4482 0.71 0.544454
Target:  5'- -cGGACCCCGCCcgacGGCCCGcGccuCGCGUg -3'
miRNA:   3'- uuCUUGGGGUGG----UUGGGC-Cu--GCGCAg -5'
5628 3' -58.3 NC_001806.1 + 4738 0.66 0.825895
Target:  5'- --cGGCCCCggGCCGggGCCCGGucgccgGCGgCGUCg -3'
miRNA:   3'- uucUUGGGG--UGGU--UGGGCC------UGC-GCAG- -5'
5628 3' -58.3 NC_001806.1 + 4958 0.69 0.624743
Target:  5'- cGGGGGCCCUcCCGuccCgCCGGGCGuCGUCg -3'
miRNA:   3'- -UUCUUGGGGuGGUu--G-GGCCUGC-GCAG- -5'
5628 3' -58.3 NC_001806.1 + 5820 0.66 0.799997
Target:  5'- -cGAGCCCCGCgcGCCCGuuGGC-CGUCc -3'
miRNA:   3'- uuCUUGGGGUGguUGGGC--CUGcGCAG- -5'
5628 3' -58.3 NC_001806.1 + 6072 0.66 0.808789
Target:  5'- --cGGCCCCggggGCgGGCCCGGGCgGCGg- -3'
miRNA:   3'- uucUUGGGG----UGgUUGGGCCUG-CGCag -5'
5628 3' -58.3 NC_001806.1 + 6798 0.72 0.449491
Target:  5'- cAGAACCgCCguGCaCGACCCGGA-GCGUCc -3'
miRNA:   3'- uUCUUGG-GG--UG-GUUGGGCCUgCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 7665 0.68 0.675318
Target:  5'- cAGGGCUCUACCcucuggacGCCCGGGCGCu-- -3'
miRNA:   3'- uUCUUGGGGUGGu-------UGGGCCUGCGcag -5'
5628 3' -58.3 NC_001806.1 + 9537 0.66 0.825895
Target:  5'- gGGGGGCCagCCACgGgACCUGGuCGCGUUc -3'
miRNA:   3'- -UUCUUGG--GGUGgU-UGGGCCuGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 15952 0.69 0.645011
Target:  5'- cGGAuCCCCgGCCAggACUCGGGgGCGUUg -3'
miRNA:   3'- uUCUuGGGG-UGGU--UGGGCCUgCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 16565 0.67 0.75397
Target:  5'- --uGGCCCCAaucUCAuCCCGGcUGCGUCg -3'
miRNA:   3'- uucUUGGGGU---GGUuGGGCCuGCGCAG- -5'
5628 3' -58.3 NC_001806.1 + 20151 0.66 0.790153
Target:  5'- gGAGAGacccgccCCCCGCC-GCCCGGGCcCGcCc -3'
miRNA:   3'- -UUCUU-------GGGGUGGuUGGGCCUGcGCaG- -5'
5628 3' -58.3 NC_001806.1 + 21297 0.67 0.751114
Target:  5'- gGAGGGCCCCcgcggcgggcACCGACgCCGGcgaggacgccggggACGcCGUCu -3'
miRNA:   3'- -UUCUUGGGG----------UGGUUG-GGCC--------------UGC-GCAG- -5'
5628 3' -58.3 NC_001806.1 + 23311 0.68 0.665239
Target:  5'- --cGGCCCgGCC-GCCCGGAgGCGg- -3'
miRNA:   3'- uucUUGGGgUGGuUGGGCCUgCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.