Results 41 - 60 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 104898 | 0.67 | 0.758661 |
Target: 5'- aUGACcccccAGGCCGuGCUGGCguuCGuGGCCc -3' miRNA: 3'- aACUGc----UCCGGUuCGAUCG---GCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 70507 | 0.67 | 0.74906 |
Target: 5'- -cGACcgccuGGGGCCcuGGCcccCCGAGGCCa -3' miRNA: 3'- aaCUG-----CUCCGGu-UCGaucGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 5493 | 0.67 | 0.74906 |
Target: 5'- -cGGCGggaAGGagGAGC-AGCgGAGGCCg -3' miRNA: 3'- aaCUGC---UCCggUUCGaUCGgCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 21356 | 0.67 | 0.74906 |
Target: 5'- -cGACagcuGGCUcuGCUGGCCuccaugguagagGAGGCCg -3' miRNA: 3'- aaCUGcu--CCGGuuCGAUCGG------------CUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 2728 | 0.67 | 0.74906 |
Target: 5'- -gGuCGGGGCCcucGGCgGGCCGGcgcgacacGGCCa -3' miRNA: 3'- aaCuGCUCCGGu--UCGaUCGGCU--------CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 91156 | 0.67 | 0.74906 |
Target: 5'- cUGuuCGAgGGCCAGGacacGGCCGcGGCCc -3' miRNA: 3'- aACu-GCU-CCGGUUCga--UCGGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 126142 | 0.67 | 0.74906 |
Target: 5'- -cGGCGAGGCC-GGC--GCCGAcacgcGGCg -3' miRNA: 3'- aaCUGCUCCGGuUCGauCGGCU-----CCGg -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 54080 | 0.67 | 0.748094 |
Target: 5'- -cGACGccaacccAGGCCGcGGCggggAGCCGAGcCCg -3' miRNA: 3'- aaCUGC-------UCCGGU-UCGa---UCGGCUCcGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 42000 | 0.67 | 0.739357 |
Target: 5'- -gGGCGAGGgcugcuCCGuGCUGGCCGcgggguugGGGUCg -3' miRNA: 3'- aaCUGCUCC------GGUuCGAUCGGC--------UCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 151535 | 0.67 | 0.739357 |
Target: 5'- -cGGCGcccguGGGcCCGGGC-GGCCGGGGgCg -3' miRNA: 3'- aaCUGC-----UCC-GGUUCGaUCGGCUCCgG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 56508 | 0.67 | 0.739357 |
Target: 5'- ---cUGGGGCCAcagcGGCaGGCCcGGGCCc -3' miRNA: 3'- aacuGCUCCGGU----UCGaUCGGcUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 151695 | 0.67 | 0.728575 |
Target: 5'- -cGGgGGGGcCCGGGCUGcccGCCGccaccgcuuuaaaGGGCCg -3' miRNA: 3'- aaCUgCUCC-GGUUCGAU---CGGC-------------UCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 120094 | 0.67 | 0.726604 |
Target: 5'- cUGGCGugccuccgggcccuGGGCCAGGCcauCCG-GGCCg -3' miRNA: 3'- aACUGC--------------UCCGGUUCGaucGGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 89578 | 0.67 | 0.719679 |
Target: 5'- -cGGCc-GGCCGGGCUuauggaccGCCGGcGGCCg -3' miRNA: 3'- aaCUGcuCCGGUUCGAu-------CGGCU-CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 84073 | 0.67 | 0.719679 |
Target: 5'- -aGuCGGGGCCccAGCUGcgcgcugccGCgGAGGCCc -3' miRNA: 3'- aaCuGCUCCGGu-UCGAU---------CGgCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 148085 | 0.67 | 0.719679 |
Target: 5'- -cGAUGGGcGCCGaggggGGCgcuguccgAGCCGcGGCCg -3' miRNA: 3'- aaCUGCUC-CGGU-----UCGa-------UCGGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 70680 | 0.67 | 0.719679 |
Target: 5'- -cGcACGAGGaCAAcguGCUGGCCGuGGUCc -3' miRNA: 3'- aaC-UGCUCCgGUU---CGAUCGGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 30416 | 0.67 | 0.719679 |
Target: 5'- -cGGgGGGGCCGGGCguggagggugGGCaCG-GGCCc -3' miRNA: 3'- aaCUgCUCCGGUUCGa---------UCG-GCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 128146 | 0.67 | 0.718686 |
Target: 5'- aUGGCGAacagcacGGUCAGGC-AGaugagcaugcCCGGGGCCg -3' miRNA: 3'- aACUGCU-------CCGGUUCGaUC----------GGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 65636 | 0.67 | 0.718686 |
Target: 5'- -gGGCGAgaggggccccggcGGCCucccccuggguGGCUGcGCUGGGGCCg -3' miRNA: 3'- aaCUGCU-------------CCGGu----------UCGAU-CGGCUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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