miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 14015 0.71 0.51176
Target:  5'- -gGACGAuagugucacacGGCCGGGCuaccgcgaucuuuauUgggGGCCGGGGCCa -3'
miRNA:   3'- aaCUGCU-----------CCGGUUCG---------------A---UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 20622 0.74 0.357118
Target:  5'- -gGGCGGGGCCGggGGUUcgaccaacgGGCCGcGGCCa -3'
miRNA:   3'- aaCUGCUCCGGU--UCGA---------UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 21356 0.67 0.74906
Target:  5'- -cGACagcuGGCUcuGCUGGCCuccaugguagagGAGGCCg -3'
miRNA:   3'- aaCUGcu--CCGGuuCGAUCGG------------CUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 21465 0.66 0.786754
Target:  5'- aUGACGGGGaCGAGUacgacgacgcAGCCGAcGCCg -3'
miRNA:   3'- aACUGCUCCgGUUCGa---------UCGGCUcCGG- -5'
5628 5' -58.1 NC_001806.1 + 21502 0.66 0.813597
Target:  5'- -cGGCGA--CCGGGCcccGGcCCGGGGCCg -3'
miRNA:   3'- aaCUGCUccGGUUCGa--UC-GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 21736 0.66 0.812725
Target:  5'- -cGACGcGGCCGaccacgcacgcgaGGCgcgGGCCGucGGGCg -3'
miRNA:   3'- aaCUGCuCCGGU-------------UCGa--UCGGC--UCCGg -5'
5628 5' -58.1 NC_001806.1 + 21976 0.66 0.777517
Target:  5'- -cGGCG-GGUCGAGCUGgacGCCGAcGCg -3'
miRNA:   3'- aaCUGCuCCGGUUCGAU---CGGCUcCGg -5'
5628 5' -58.1 NC_001806.1 + 22032 0.69 0.648916
Target:  5'- -cGACGGGuaCGucAGCggggAGCCGuGGCCc -3'
miRNA:   3'- aaCUGCUCcgGU--UCGa---UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 22093 0.67 0.758661
Target:  5'- cUGuACGGcGGCCuGGGCgacAGCCGcccGGGCCu -3'
miRNA:   3'- aAC-UGCU-CCGG-UUCGa--UCGGC---UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 22146 0.67 0.709722
Target:  5'- -gGAgGAGGCgCGAcGCcGGuUCGAGGCCu -3'
miRNA:   3'- aaCUgCUCCG-GUU-CGaUC-GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 22192 0.66 0.804803
Target:  5'- gUGugGGcGcCCGAGCUGGgCGAcGCCg -3'
miRNA:   3'- aACugCUcC-GGUUCGAUCgGCUcCGG- -5'
5628 5' -58.1 NC_001806.1 + 22417 0.72 0.460399
Target:  5'- aUGGCGGccGGCC--GCUucGGCUGGGGCCu -3'
miRNA:   3'- aACUGCU--CCGGuuCGA--UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 22767 0.71 0.479117
Target:  5'- -cGACGAcGCCGGGCgccgcGCCcAGGCCg -3'
miRNA:   3'- aaCUGCUcCGGUUCGau---CGGcUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 22863 0.81 0.12179
Target:  5'- -cGGCGAccuggcGGCCGucccggGGCUGGCCGGGGCCc -3'
miRNA:   3'- aaCUGCU------CCGGU------UCGAUCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 23046 0.67 0.758661
Target:  5'- cUGcGCGuGGCCGgcGGC-AG-CGAGGCCg -3'
miRNA:   3'- aAC-UGCuCCGGU--UCGaUCgGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 23924 0.72 0.460399
Target:  5'- -gGGCGAGGaCCuGGCcGGCggCGGGGCCu -3'
miRNA:   3'- aaCUGCUCC-GGuUCGaUCG--GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 24002 0.69 0.597789
Target:  5'- cUGGCGGcccuGGCCAaccGGCUgugcgGGCCGGacacGGCCg -3'
miRNA:   3'- aACUGCU----CCGGU---UCGA-----UCGGCU----CCGG- -5'
5628 5' -58.1 NC_001806.1 + 24876 0.66 0.795852
Target:  5'- -cGGCgGGGGCCGuggagguGCUgggGGCgGAGGCg -3'
miRNA:   3'- aaCUG-CUCCGGUu------CGA---UCGgCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 25536 0.76 0.264862
Target:  5'- -gGGCuGGGGCCGGGgagGGCUGGGGCCg -3'
miRNA:   3'- aaCUG-CUCCGGUUCga-UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 25568 0.76 0.264862
Target:  5'- -gGGCuGGGGCCGGGgagGGCUGGGGCCg -3'
miRNA:   3'- aaCUG-CUCCGGUUCga-UCGGCUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.