miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 1341 0.66 0.813597
Target:  5'- -gGGCGuGGCCAAGCccGCCuccGCCc -3'
miRNA:   3'- aaCUGCuCCGGUUCGauCGGcucCGG- -5'
5628 5' -58.1 NC_001806.1 + 1396 0.68 0.679495
Target:  5'- -aGcACGGuGCCGcugcGGCccgUGGCCGAGGCCc -3'
miRNA:   3'- aaC-UGCUcCGGU----UCG---AUCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 1898 0.66 0.768149
Target:  5'- -aGACccccGGGCCGAacacGC-GGcCCGAGGCCa -3'
miRNA:   3'- aaCUGc---UCCGGUU----CGaUC-GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 2393 0.66 0.795852
Target:  5'- cUGGCGcauccAGGCCGccaugcggcgcAGCgGGCCcGAGGCg -3'
miRNA:   3'- aACUGC-----UCCGGU-----------UCGaUCGG-CUCCGg -5'
5628 5' -58.1 NC_001806.1 + 2521 0.7 0.591679
Target:  5'- -cGGCGGGGgCGGGCccGGCgcaccgcgcggcgauCGAGGCCa -3'
miRNA:   3'- aaCUGCUCCgGUUCGa-UCG---------------GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 2662 0.66 0.786754
Target:  5'- -gGGCGGcGGCCGcgGGCgccGCCGuguGGCUg -3'
miRNA:   3'- aaCUGCU-CCGGU--UCGau-CGGCu--CCGG- -5'
5628 5' -58.1 NC_001806.1 + 2728 0.67 0.74906
Target:  5'- -gGuCGGGGCCcucGGCgGGCCGGcgcgacacGGCCa -3'
miRNA:   3'- aaCuGCUCCGGu--UCGaUCGGCU--------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 2812 0.7 0.557293
Target:  5'- -gGGCGGGGgCGGGCUcgGGCCccgGGGGCg -3'
miRNA:   3'- aaCUGCUCCgGUUCGA--UCGG---CUCCGg -5'
5628 5' -58.1 NC_001806.1 + 2855 0.66 0.777517
Target:  5'- -gGGCGcggggagggGGGCgCGGGCguccgAGCCGGGGgCg -3'
miRNA:   3'- aaCUGC---------UCCG-GUUCGa----UCGGCUCCgG- -5'
5628 5' -58.1 NC_001806.1 + 3356 0.68 0.679495
Target:  5'- cUGGCG-GGCCGGGCcccGGCCagccccggGAcGGCCg -3'
miRNA:   3'- aACUGCuCCGGUUCGa--UCGG--------CU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 3811 0.67 0.709722
Target:  5'- --cGCGuGcGCCAGGCcccAGCCGAagcGGCCg -3'
miRNA:   3'- aacUGCuC-CGGUUCGa--UCGGCU---CCGG- -5'
5628 5' -58.1 NC_001806.1 + 4185 0.68 0.679495
Target:  5'- -gGGCgGGGGCCcGGC--GCCG-GGCCa -3'
miRNA:   3'- aaCUG-CUCCGGuUCGauCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 4608 0.72 0.433069
Target:  5'- -cGACGAGGUCGAuGac-GCCGAuGGCCg -3'
miRNA:   3'- aaCUGCUCCGGUU-CgauCGGCU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 4720 0.72 0.424171
Target:  5'- --aGCGGGGCCucccguucgcGGCcccgGGCCGGGGCCc -3'
miRNA:   3'- aacUGCUCCGGu---------UCGa---UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 4833 0.68 0.699701
Target:  5'- -cGGCGAGGCC--GCggGGUCGGGcGUCg -3'
miRNA:   3'- aaCUGCUCCGGuuCGa-UCGGCUC-CGG- -5'
5628 5' -58.1 NC_001806.1 + 5107 0.72 0.460399
Target:  5'- -cGGUGGGGCCcGGggAGCCGGGGCg -3'
miRNA:   3'- aaCUGCUCCGGuUCgaUCGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 5493 0.67 0.74906
Target:  5'- -cGGCGggaAGGagGAGC-AGCgGAGGCCg -3'
miRNA:   3'- aaCUGC---UCCggUUCGaUCGgCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 10394 0.66 0.777517
Target:  5'- -gGGCGGGGggAGGCgggAGCCGGGGg- -3'
miRNA:   3'- aaCUGCUCCggUUCGa--UCGGCUCCgg -5'
5628 5' -58.1 NC_001806.1 + 10541 0.68 0.66933
Target:  5'- ---cCGAGGCCAcuuGGCgAGCCGGGuCCu -3'
miRNA:   3'- aacuGCUCCGGU---UCGaUCGGCUCcGG- -5'
5628 5' -58.1 NC_001806.1 + 11840 0.72 0.433069
Target:  5'- -gGugGAGGCCugguuaggggcGGGUUGguauacgcucGCCGGGGCCa -3'
miRNA:   3'- aaCugCUCCGG-----------UUCGAU----------CGGCUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.