Results 1 - 20 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5628 | 5' | -58.1 | NC_001806.1 | + | 150664 | 0.66 | 0.813597 |
Target: 5'- gUUGGCcGGGCCccgccgcgcuGGCggccGCCGAuGGCCa -3' miRNA: 3'- -AACUGcUCCGGu---------UCGau--CGGCU-CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 94189 | 0.75 | 0.326495 |
Target: 5'- ---cUGAGGCCGGGCcuggaggcccaGGCCGGGGCCu -3' miRNA: 3'- aacuGCUCCGGUUCGa----------UCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 132984 | 0.75 | 0.326495 |
Target: 5'- -gGugGuGGCCGcucccucagAGCccugGGCCGGGGCCg -3' miRNA: 3'- aaCugCuCCGGU---------UCGa---UCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 73444 | 0.74 | 0.340794 |
Target: 5'- -gGACGcacacccAGGCCGGGgUGGCCGGcccGGCCg -3' miRNA: 3'- aaCUGC-------UCCGGUUCgAUCGGCU---CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 20622 | 0.74 | 0.357118 |
Target: 5'- -gGGCGGGGCCGggGGUUcgaccaacgGGCCGcGGCCa -3' miRNA: 3'- aaCUGCUCCGGU--UCGA---------UCGGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 77506 | 0.73 | 0.388864 |
Target: 5'- -gGGCGAGGCguaccugCGAGUgAGCgGAGGCCc -3' miRNA: 3'- aaCUGCUCCG-------GUUCGaUCGgCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 93469 | 0.73 | 0.415383 |
Target: 5'- -gGACGcGGCCcuggagguGGCgcacgaGGCCGAGGCCc -3' miRNA: 3'- aaCUGCuCCGGu-------UCGa-----UCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 131495 | 0.73 | 0.415383 |
Target: 5'- -cGA-GGGGCCAAGUUGGCCcccggacccGGGCCg -3' miRNA: 3'- aaCUgCUCCGGUUCGAUCGGc--------UCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 151279 | 0.73 | 0.418884 |
Target: 5'- -gGugGGGGCCGgggccggggggcggcGGCggugGGCCG-GGCCu -3' miRNA: 3'- aaCugCUCCGGU---------------UCGa---UCGGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 92923 | 0.75 | 0.31915 |
Target: 5'- -gGGCGGGG-CGGGCcuggaGGCCGGGGCCc -3' miRNA: 3'- aaCUGCUCCgGUUCGa----UCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 57032 | 0.76 | 0.284293 |
Target: 5'- cUGG-GuGGCCGGGCccggGGCCGGGGCCc -3' miRNA: 3'- aACUgCuCCGGUUCGa---UCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 76581 | 0.76 | 0.264862 |
Target: 5'- --cGCGAGcGCCGGGCccAGCuCGAGGCCg -3' miRNA: 3'- aacUGCUC-CGGUUCGa-UCG-GCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 22863 | 0.81 | 0.12179 |
Target: 5'- -cGGCGAccuggcGGCCGucccggGGCUGGCCGGGGCCc -3' miRNA: 3'- aaCUGCU------CCGGU------UCGAUCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 34402 | 0.8 | 0.157629 |
Target: 5'- -cGGCGGuGGCCGGGCcgGGCCG-GGCCg -3' miRNA: 3'- aaCUGCU-CCGGUUCGa-UCGGCuCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 77121 | 0.79 | 0.17447 |
Target: 5'- ----aGAGcGCCGAGCgGGCCGGGGCCg -3' miRNA: 3'- aacugCUC-CGGUUCGaUCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 150997 | 0.78 | 0.202734 |
Target: 5'- -cGGCGc-GCCAGGCgggcGGCCGAGGCCc -3' miRNA: 3'- aaCUGCucCGGUUCGa---UCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 51597 | 0.77 | 0.246521 |
Target: 5'- -gGGCGAGGUgGAGCUGcCCGGcGGCCa -3' miRNA: 3'- aaCUGCUCCGgUUCGAUcGGCU-CCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 25536 | 0.76 | 0.264862 |
Target: 5'- -gGGCuGGGGCCGGGgagGGCUGGGGCCg -3' miRNA: 3'- aaCUG-CUCCGGUUCga-UCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 25568 | 0.76 | 0.264862 |
Target: 5'- -gGGCuGGGGCCGGGgagGGCUGGGGCCg -3' miRNA: 3'- aaCUG-CUCCGGUUCga-UCGGCUCCGG- -5' |
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5628 | 5' | -58.1 | NC_001806.1 | + | 25600 | 0.76 | 0.264862 |
Target: 5'- -gGGCuGGGGCCGGGgagGGCUGGGGCCg -3' miRNA: 3'- aaCUG-CUCCGGUUCga-UCGGCUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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