miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 28175 0.66 0.795852
Target:  5'- --cGCGAGGUgAGG--GGCCGGGcGCCa -3'
miRNA:   3'- aacUGCUCCGgUUCgaUCGGCUC-CGG- -5'
5628 5' -58.1 NC_001806.1 + 150492 0.66 0.786754
Target:  5'- --aGCG-GGaaGGGC-GGCCGGGGCCg -3'
miRNA:   3'- aacUGCuCCggUUCGaUCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 68275 0.66 0.777517
Target:  5'- cUGGCcacGGCCAAGCUGcgcGCCGccauGGCg -3'
miRNA:   3'- aACUGcu-CCGGUUCGAU---CGGCu---CCGg -5'
5628 5' -58.1 NC_001806.1 + 151322 0.66 0.786754
Target:  5'- cUGGCGccGGCuCGGGCggggGGCUGuccGGCCa -3'
miRNA:   3'- aACUGCu-CCG-GUUCGa---UCGGCu--CCGG- -5'
5628 5' -58.1 NC_001806.1 + 1898 0.66 0.768149
Target:  5'- -aGACccccGGGCCGAacacGC-GGcCCGAGGCCa -3'
miRNA:   3'- aaCUGc---UCCGGUU----CGaUC-GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 21976 0.66 0.777517
Target:  5'- -cGGCG-GGUCGAGCUGgacGCCGAcGCg -3'
miRNA:   3'- aaCUGCuCCGGUUCGAU---CGGCUcCGg -5'
5628 5' -58.1 NC_001806.1 + 76815 0.66 0.777517
Target:  5'- --aGCGcGGCCAgcGGCgacGGCCcGGGCCu -3'
miRNA:   3'- aacUGCuCCGGU--UCGa--UCGGcUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 138421 0.66 0.768149
Target:  5'- --uGCGAGGUgCAcagcaaacagcAGCUGGUCGuGGCCc -3'
miRNA:   3'- aacUGCUCCG-GU-----------UCGAUCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 119591 0.66 0.777517
Target:  5'- cUGGCG-GGUCugGAGCcccccGGCgGGGGCCg -3'
miRNA:   3'- aACUGCuCCGG--UUCGa----UCGgCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 95526 0.66 0.768149
Target:  5'- cUGACGAagcGGUCGuuGGCcAGCCuGGGGCg -3'
miRNA:   3'- aACUGCU---CCGGU--UCGaUCGG-CUCCGg -5'
5628 5' -58.1 NC_001806.1 + 61544 0.66 0.795852
Target:  5'- -gGGCgGGGGCUuGGCgugcccGCCGAGGUa -3'
miRNA:   3'- aaCUG-CUCCGGuUCGau----CGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 146069 0.66 0.777517
Target:  5'- -cGGCcaGAGGCCAGGUcAGUCcGGGCg -3'
miRNA:   3'- aaCUG--CUCCGGUUCGaUCGGcUCCGg -5'
5628 5' -58.1 NC_001806.1 + 107020 0.66 0.795852
Target:  5'- --cGCGcuuGCCGGGUUGGCCGcccgcgGGGCCg -3'
miRNA:   3'- aacUGCuc-CGGUUCGAUCGGC------UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 21465 0.66 0.786754
Target:  5'- aUGACGGGGaCGAGUacgacgacgcAGCCGAcGCCg -3'
miRNA:   3'- aACUGCUCCgGUUCGa---------UCGGCUcCGG- -5'
5628 5' -58.1 NC_001806.1 + 132904 0.66 0.789499
Target:  5'- cUGGCGGcccuGGCCGaccucggggggagcgGGCUGGCgGAcccccacGGCCg -3'
miRNA:   3'- aACUGCU----CCGGU---------------UCGAUCGgCU-------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 10394 0.66 0.777517
Target:  5'- -gGGCGGGGggAGGCgggAGCCGGGGg- -3'
miRNA:   3'- aaCUGCUCCggUUCGa--UCGGCUCCgg -5'
5628 5' -58.1 NC_001806.1 + 2662 0.66 0.786754
Target:  5'- -gGGCGGcGGCCGcgGGCgccGCCGuguGGCUg -3'
miRNA:   3'- aaCUGCU-CCGGU--UCGau-CGGCu--CCGG- -5'
5628 5' -58.1 NC_001806.1 + 151449 0.66 0.795852
Target:  5'- -gGGCGGcGGCgGGGC-GGCCGcGGGCg -3'
miRNA:   3'- aaCUGCU-CCGgUUCGaUCGGC-UCCGg -5'
5628 5' -58.1 NC_001806.1 + 76047 0.66 0.777517
Target:  5'- cUGGCGcGGCUucugcGGCUGGCgggGGGGCUg -3'
miRNA:   3'- aACUGCuCCGGu----UCGAUCGg--CUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 2855 0.66 0.777517
Target:  5'- -gGGCGcggggagggGGGCgCGGGCguccgAGCCGGGGgCg -3'
miRNA:   3'- aaCUGC---------UCCG-GUUCGa----UCGGCUCCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.