miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 98871 1.08 0.001738
Target:  5'- uUUGACGAGGCCAAGCUAGCCGAGGCCc -3'
miRNA:   3'- -AACUGCUCCGGUUCGAUCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 22863 0.81 0.12179
Target:  5'- -cGGCGAccuggcGGCCGucccggGGCUGGCCGGGGCCc -3'
miRNA:   3'- aaCUGCU------CCGGU------UCGAUCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 34402 0.8 0.157629
Target:  5'- -cGGCGGuGGCCGGGCcgGGCCG-GGCCg -3'
miRNA:   3'- aaCUGCU-CCGGUUCGa-UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 77121 0.79 0.17447
Target:  5'- ----aGAGcGCCGAGCgGGCCGGGGCCg -3'
miRNA:   3'- aacugCUC-CGGUUCGaUCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 150997 0.78 0.202734
Target:  5'- -cGGCGc-GCCAGGCgggcGGCCGAGGCCc -3'
miRNA:   3'- aaCUGCucCGGUUCGa---UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 51597 0.77 0.246521
Target:  5'- -gGGCGAGGUgGAGCUGcCCGGcGGCCa -3'
miRNA:   3'- aaCUGCUCCGgUUCGAUcGGCU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 25536 0.76 0.264862
Target:  5'- -gGGCuGGGGCCGGGgagGGCUGGGGCCg -3'
miRNA:   3'- aaCUG-CUCCGGUUCga-UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 25568 0.76 0.264862
Target:  5'- -gGGCuGGGGCCGGGgagGGCUGGGGCCg -3'
miRNA:   3'- aaCUG-CUCCGGUUCga-UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 25600 0.76 0.264862
Target:  5'- -gGGCuGGGGCCGGGgagGGCUGGGGCCg -3'
miRNA:   3'- aaCUG-CUCCGGUUCga-UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 76581 0.76 0.264862
Target:  5'- --cGCGAGcGCCGGGCccAGCuCGAGGCCg -3'
miRNA:   3'- aacUGCUC-CGGUUCGa-UCG-GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 57032 0.76 0.284293
Target:  5'- cUGG-GuGGCCGGGCccggGGCCGGGGCCc -3'
miRNA:   3'- aACUgCuCCGGUUCGa---UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 92923 0.75 0.31915
Target:  5'- -gGGCGGGG-CGGGCcuggaGGCCGGGGCCc -3'
miRNA:   3'- aaCUGCUCCgGUUCGa----UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 94189 0.75 0.326495
Target:  5'- ---cUGAGGCCGGGCcuggaggcccaGGCCGGGGCCu -3'
miRNA:   3'- aacuGCUCCGGUUCGa----------UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 132984 0.75 0.326495
Target:  5'- -gGugGuGGCCGcucccucagAGCccugGGCCGGGGCCg -3'
miRNA:   3'- aaCugCuCCGGU---------UCGa---UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 73444 0.74 0.340794
Target:  5'- -gGACGcacacccAGGCCGGGgUGGCCGGcccGGCCg -3'
miRNA:   3'- aaCUGC-------UCCGGUUCgAUCGGCU---CCGG- -5'
5628 5' -58.1 NC_001806.1 + 20622 0.74 0.357118
Target:  5'- -gGGCGGGGCCGggGGUUcgaccaacgGGCCGcGGCCa -3'
miRNA:   3'- aaCUGCUCCGGU--UCGA---------UCGGCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 77506 0.73 0.388864
Target:  5'- -gGGCGAGGCguaccugCGAGUgAGCgGAGGCCc -3'
miRNA:   3'- aaCUGCUCCG-------GUUCGaUCGgCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 93469 0.73 0.415383
Target:  5'- -gGACGcGGCCcuggagguGGCgcacgaGGCCGAGGCCc -3'
miRNA:   3'- aaCUGCuCCGGu-------UCGa-----UCGGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 131495 0.73 0.415383
Target:  5'- -cGA-GGGGCCAAGUUGGCCcccggacccGGGCCg -3'
miRNA:   3'- aaCUgCUCCGGUUCGAUCGGc--------UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 76894 0.73 0.418884
Target:  5'- -cGuCGAGGCCcugcggaggucucucGAGgaGGCCGAGGCg -3'
miRNA:   3'- aaCuGCUCCGG---------------UUCgaUCGGCUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.