miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5630 5' -58 NC_001806.1 + 97405 1.08 0.002066
Target:  5'- cACGACCCCCAAGUUCACCGUGGCCUGg -3'
miRNA:   3'- -UGCUGGGGGUUCAAGUGGCACCGGAC- -5'
5630 5' -58 NC_001806.1 + 63958 0.75 0.363061
Target:  5'- gAUGGCCCgCAGGgUCGCCuuguuugugGUGGCCUGg -3'
miRNA:   3'- -UGCUGGGgGUUCaAGUGG---------CACCGGAC- -5'
5630 5' -58 NC_001806.1 + 89463 0.73 0.421164
Target:  5'- -gGACCCCCAGGcUCGCCcG-GGCCg- -3'
miRNA:   3'- ugCUGGGGGUUCaAGUGG-CaCCGGac -5'
5630 5' -58 NC_001806.1 + 68939 0.72 0.47519
Target:  5'- gACGACCCCCGAGcgggggGCUGUGGUCc- -3'
miRNA:   3'- -UGCUGGGGGUUCaag---UGGCACCGGac -5'
5630 5' -58 NC_001806.1 + 124070 0.71 0.522722
Target:  5'- cACGACCCUCGAGaUCcCCGgGGCCc- -3'
miRNA:   3'- -UGCUGGGGGUUCaAGuGGCaCCGGac -5'
5630 5' -58 NC_001806.1 + 3385 0.71 0.552109
Target:  5'- gACGGCCgCCAGG-UCGCCGUcgaagcccucGGCCa- -3'
miRNA:   3'- -UGCUGGgGGUUCaAGUGGCA----------CCGGac -5'
5630 5' -58 NC_001806.1 + 2301 0.71 0.552109
Target:  5'- gGCGGCCCCCccGAGgcccCGCCGccGGCCa- -3'
miRNA:   3'- -UGCUGGGGG--UUCaa--GUGGCa-CCGGac -5'
5630 5' -58 NC_001806.1 + 93172 0.71 0.562019
Target:  5'- cCGcACCCgCAAGUUCGuCC-UGGCCUGu -3'
miRNA:   3'- uGC-UGGGgGUUCAAGU-GGcACCGGAC- -5'
5630 5' -58 NC_001806.1 + 135063 0.71 0.562019
Target:  5'- cCGGCCCCgCGGGgacgCGCCG-GGCCg- -3'
miRNA:   3'- uGCUGGGG-GUUCaa--GUGGCaCCGGac -5'
5630 5' -58 NC_001806.1 + 17812 0.71 0.571976
Target:  5'- cCGACUcgguuuuugCCCGAGUggACCGUGGCgUGg -3'
miRNA:   3'- uGCUGG---------GGGUUCAagUGGCACCGgAC- -5'
5630 5' -58 NC_001806.1 + 34557 0.7 0.581975
Target:  5'- cGCGACCCggccgCCGGGgagcguugUCGCCGUcGGUCUGc -3'
miRNA:   3'- -UGCUGGG-----GGUUCa-------AGUGGCA-CCGGAC- -5'
5630 5' -58 NC_001806.1 + 144886 0.7 0.591004
Target:  5'- -aGGCCCCCcggaggcuuuuccGGGUUC-CCGgcccggGGCCUGa -3'
miRNA:   3'- ugCUGGGGG-------------UUCAAGuGGCa-----CCGGAC- -5'
5630 5' -58 NC_001806.1 + 23076 0.7 0.612155
Target:  5'- gUGGCCgCCGuGcgCGCCGUGaGCCUGg -3'
miRNA:   3'- uGCUGGgGGUuCaaGUGGCAC-CGGAC- -5'
5630 5' -58 NC_001806.1 + 84809 0.7 0.612155
Target:  5'- cCGACCCCCA---UCGCCGcGGCUc- -3'
miRNA:   3'- uGCUGGGGGUucaAGUGGCaCCGGac -5'
5630 5' -58 NC_001806.1 + 60587 0.7 0.622254
Target:  5'- -gGAUCCCCGGGacgUUACCGggGGCCa- -3'
miRNA:   3'- ugCUGGGGGUUCa--AGUGGCa-CCGGac -5'
5630 5' -58 NC_001806.1 + 136382 0.7 0.63236
Target:  5'- cGCGGCCUCCGcG---ACCGUGGCCa- -3'
miRNA:   3'- -UGCUGGGGGUuCaagUGGCACCGGac -5'
5630 5' -58 NC_001806.1 + 94008 0.7 0.63236
Target:  5'- gAUGGCCgCCCcGGUguccgagccCACCGUGGCCc- -3'
miRNA:   3'- -UGCUGG-GGGuUCAa--------GUGGCACCGGac -5'
5630 5' -58 NC_001806.1 + 1377 0.69 0.641456
Target:  5'- cACGGCCCCCGccgccgccagcacGGUgccgcugCGgcCCGUGGCCg- -3'
miRNA:   3'- -UGCUGGGGGU-------------UCAa------GU--GGCACCGGac -5'
5630 5' -58 NC_001806.1 + 84541 0.69 0.662646
Target:  5'- uUGACCCCUggGUUCugUucGGCCa- -3'
miRNA:   3'- uGCUGGGGGuuCAAGugGcaCCGGac -5'
5630 5' -58 NC_001806.1 + 42396 0.69 0.662646
Target:  5'- cGCGcCCCCCAGa--CGCUG-GGCCUGa -3'
miRNA:   3'- -UGCuGGGGGUUcaaGUGGCaCCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.