miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5630 5' -58 NC_001806.1 + 1377 0.69 0.641456
Target:  5'- cACGGCCCCCGccgccgccagcacGGUgccgcugCGgcCCGUGGCCg- -3'
miRNA:   3'- -UGCUGGGGGU-------------UCAa------GU--GGCACCGGac -5'
5630 5' -58 NC_001806.1 + 2301 0.71 0.552109
Target:  5'- gGCGGCCCCCccGAGgcccCGCCGccGGCCa- -3'
miRNA:   3'- -UGCUGGGGG--UUCaa--GUGGCa-CCGGac -5'
5630 5' -58 NC_001806.1 + 3385 0.71 0.552109
Target:  5'- gACGGCCgCCAGG-UCGCCGUcgaagcccucGGCCa- -3'
miRNA:   3'- -UGCUGGgGGUUCaAGUGGCA----------CCGGac -5'
5630 5' -58 NC_001806.1 + 3649 0.67 0.77931
Target:  5'- gGCGACCCCCucGUcaucugCGCCG-GcGCCg- -3'
miRNA:   3'- -UGCUGGGGGuuCAa-----GUGGCaC-CGGac -5'
5630 5' -58 NC_001806.1 + 3913 0.66 0.814837
Target:  5'- cGCGGCgCCCGAGau--CCGgaagcaGGCCUGg -3'
miRNA:   3'- -UGCUGgGGGUUCaaguGGCa-----CCGGAC- -5'
5630 5' -58 NC_001806.1 + 5589 0.66 0.831662
Target:  5'- cCGGCaCgCCGGGggC-CCGUGGCCg- -3'
miRNA:   3'- uGCUG-GgGGUUCaaGuGGCACCGGac -5'
5630 5' -58 NC_001806.1 + 9078 0.66 0.826686
Target:  5'- gACGGCCCCCAggccggaagccccccGGagcCACCGagcGGCCa- -3'
miRNA:   3'- -UGCUGGGGGU---------------UCaa-GUGGCa--CCGGac -5'
5630 5' -58 NC_001806.1 + 9730 0.69 0.666673
Target:  5'- gGCGGCCCCCAucAccgccccuaaccgcaGggCGCCGUGGgUUGg -3'
miRNA:   3'- -UGCUGGGGGU--U---------------CaaGUGGCACCgGAC- -5'
5630 5' -58 NC_001806.1 + 17812 0.71 0.571976
Target:  5'- cCGACUcgguuuuugCCCGAGUggACCGUGGCgUGg -3'
miRNA:   3'- uGCUGG---------GGGUUCAagUGGCACCGgAC- -5'
5630 5' -58 NC_001806.1 + 21138 0.67 0.760741
Target:  5'- cCGGCuCCCCGGGcccCACCGacgGGCCg- -3'
miRNA:   3'- uGCUG-GGGGUUCaa-GUGGCa--CCGGac -5'
5630 5' -58 NC_001806.1 + 23076 0.7 0.612155
Target:  5'- gUGGCCgCCGuGcgCGCCGUGaGCCUGg -3'
miRNA:   3'- uGCUGGgGGUuCaaGUGGCAC-CGGAC- -5'
5630 5' -58 NC_001806.1 + 23613 0.66 0.84778
Target:  5'- uACuGCUCCCc-GcgCGCCGUGGCCg- -3'
miRNA:   3'- -UGcUGGGGGuuCaaGUGGCACCGGac -5'
5630 5' -58 NC_001806.1 + 24817 0.67 0.751285
Target:  5'- gGCG-CCgCCCGGGaUUCGCUG-GGCCUc -3'
miRNA:   3'- -UGCuGG-GGGUUC-AAGUGGCaCCGGAc -5'
5630 5' -58 NC_001806.1 + 29425 0.66 0.831662
Target:  5'- aACGACCCCCAGacccgCAUgGaGGCCg- -3'
miRNA:   3'- -UGCUGGGGGUUcaa--GUGgCaCCGGac -5'
5630 5' -58 NC_001806.1 + 30216 0.68 0.732076
Target:  5'- cGCGcGCCCCCGcGcg-GCCGUGGCCc- -3'
miRNA:   3'- -UGC-UGGGGGUuCaagUGGCACCGGac -5'
5630 5' -58 NC_001806.1 + 34346 0.68 0.702651
Target:  5'- aACGGCCCCCGGGgaacgggggACCG-GGgCUGg -3'
miRNA:   3'- -UGCUGGGGGUUCaag------UGGCaCCgGAC- -5'
5630 5' -58 NC_001806.1 + 34557 0.7 0.581975
Target:  5'- cGCGACCCggccgCCGGGgagcguugUCGCCGUcGGUCUGc -3'
miRNA:   3'- -UGCUGGG-----GGUUCa-------AGUGGCA-CCGGAC- -5'
5630 5' -58 NC_001806.1 + 42396 0.69 0.662646
Target:  5'- cGCGcCCCCCAGa--CGCUG-GGCCUGa -3'
miRNA:   3'- -UGCuGGGGGUUcaaGUGGCaCCGGAC- -5'
5630 5' -58 NC_001806.1 + 52289 0.66 0.818256
Target:  5'- cGCGACCCUCAccggguacggcgucuGGgcCACCGacaGCCUGa -3'
miRNA:   3'- -UGCUGGGGGU---------------UCaaGUGGCac-CGGAC- -5'
5630 5' -58 NC_001806.1 + 56239 0.66 0.839813
Target:  5'- -aGGCCCCgAAGcgUCGCCGccaaccgGGCCc- -3'
miRNA:   3'- ugCUGGGGgUUCa-AGUGGCa------CCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.