miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5632 3' -55.9 NC_001806.1 + 93971 1.1 0.00236
Target:  5'- cCGCAUACUCCGGCCGCGGUACAGAUCg -3'
miRNA:   3'- -GCGUAUGAGGCCGGCGCCAUGUCUAG- -5'
5632 3' -55.9 NC_001806.1 + 3330 0.75 0.442075
Target:  5'- cCGCGgguccCUCCGGCCGCGGggggcugGCGGGc- -3'
miRNA:   3'- -GCGUau---GAGGCCGGCGCCa------UGUCUag -5'
5632 3' -55.9 NC_001806.1 + 42007 0.73 0.557293
Target:  5'- gGC-UGCUCCgugcuGGCCGCGGggUugGGGUCg -3'
miRNA:   3'- gCGuAUGAGG-----CCGGCGCC--AugUCUAG- -5'
5632 3' -55.9 NC_001806.1 + 88140 0.73 0.557293
Target:  5'- gGaCGUGCUCCagGGCgGUGGUggACAGGUCg -3'
miRNA:   3'- gC-GUAUGAGG--CCGgCGCCA--UGUCUAG- -5'
5632 3' -55.9 NC_001806.1 + 66442 0.72 0.618216
Target:  5'- cCGCAgg-UCCGGCUgccaGCGGUACAGccuGUCg -3'
miRNA:   3'- -GCGUaugAGGCCGG----CGCCAUGUC---UAG- -5'
5632 3' -55.9 NC_001806.1 + 50892 0.71 0.689622
Target:  5'- gGCGgACUCCgcgcGGCCGCGGaGCacguGGAUCu -3'
miRNA:   3'- gCGUaUGAGG----CCGGCGCCaUG----UCUAG- -5'
5632 3' -55.9 NC_001806.1 + 69648 0.69 0.758661
Target:  5'- gCGCGUAUcaugggUCCGGCCGUGccgACGGAa- -3'
miRNA:   3'- -GCGUAUG------AGGCCGGCGCca-UGUCUag -5'
5632 3' -55.9 NC_001806.1 + 29838 0.69 0.775654
Target:  5'- aCGCAgccccccagCCGGCCGCGGcucggACAGcgCc -3'
miRNA:   3'- -GCGUauga-----GGCCGGCGCCa----UGUCuaG- -5'
5632 3' -55.9 NC_001806.1 + 92895 0.68 0.813597
Target:  5'- uGCAgGCUgCGGCCGCguGGUccgcGCAGggCg -3'
miRNA:   3'- gCGUaUGAgGCCGGCG--CCA----UGUCuaG- -5'
5632 3' -55.9 NC_001806.1 + 3090 0.68 0.838958
Target:  5'- cCGCGgcgGCggCGGCCGCGGagcucgGCAGGc- -3'
miRNA:   3'- -GCGUa--UGagGCCGGCGCCa-----UGUCUag -5'
5632 3' -55.9 NC_001806.1 + 136381 0.68 0.838958
Target:  5'- cCGCGgcCUCCGcGaCCGUGGccagcugGCGGGUCa -3'
miRNA:   3'- -GCGUauGAGGC-C-GGCGCCa------UGUCUAG- -5'
5632 3' -55.9 NC_001806.1 + 73285 0.68 0.822226
Target:  5'- cCGCGUGCUCC-GCCGCccuGGcccGCgAGGUCg -3'
miRNA:   3'- -GCGUAUGAGGcCGGCG---CCa--UG-UCUAG- -5'
5632 3' -55.9 NC_001806.1 + 122519 0.68 0.813597
Target:  5'- aGCGUGCcguacgUCCGGCCGUGGgugGCcacGUCc -3'
miRNA:   3'- gCGUAUG------AGGCCGGCGCCa--UGuc-UAG- -5'
5632 3' -55.9 NC_001806.1 + 70206 0.68 0.813597
Target:  5'- aGCAgcUGCUCCGGgaGCuGUACGuGAUCu -3'
miRNA:   3'- gCGU--AUGAGGCCggCGcCAUGU-CUAG- -5'
5632 3' -55.9 NC_001806.1 + 9858 0.68 0.812725
Target:  5'- cCGCGU--UCCGguacugcGCCGCGGUGCuGAUg -3'
miRNA:   3'- -GCGUAugAGGC-------CGGCGCCAUGuCUAg -5'
5632 3' -55.9 NC_001806.1 + 132761 0.68 0.804803
Target:  5'- cCGgAUGcCUCCuGcCCGCGGUGCGGGa- -3'
miRNA:   3'- -GCgUAU-GAGGcC-GGCGCCAUGUCUag -5'
5632 3' -55.9 NC_001806.1 + 6082 0.67 0.854938
Target:  5'- gGCGgGC-CCgGGCgGCGGgggGCGGGUCu -3'
miRNA:   3'- gCGUaUGaGG-CCGgCGCCa--UGUCUAG- -5'
5632 3' -55.9 NC_001806.1 + 46418 0.67 0.854938
Target:  5'- gCGCGUcUUCUGcGCCGCGGU-CGGGc- -3'
miRNA:   3'- -GCGUAuGAGGC-CGGCGCCAuGUCUag -5'
5632 3' -55.9 NC_001806.1 + 84885 0.67 0.862628
Target:  5'- gGCGggACUCUGGgCGUGGUGC--GUCg -3'
miRNA:   3'- gCGUa-UGAGGCCgGCGCCAUGucUAG- -5'
5632 3' -55.9 NC_001806.1 + 87507 0.67 0.869372
Target:  5'- aCGCGgauCUgCUGGCCGUcguagauGGUGCGGGUg -3'
miRNA:   3'- -GCGUau-GA-GGCCGGCG-------CCAUGUCUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.