miRNA display CGI


Results 41 - 60 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5632 5' -62 NC_001806.1 + 67486 0.68 0.530281
Target:  5'- ---cUGGCCGCCcuCCGGgGUCCcgacccccugggGAGCCc -3'
miRNA:   3'- cucuACCGGCGG--GGCCaCAGG------------CUCGG- -5'
5632 5' -62 NC_001806.1 + 67842 0.68 0.529336
Target:  5'- ----gGGCCGCCCCGcagaaaGUccgcacccacgccGUCCGGGCUg -3'
miRNA:   3'- cucuaCCGGCGGGGC------CA-------------CAGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 68588 0.67 0.607441
Target:  5'- ----cGGCgGCCCUGGggccgGUCCGcguccGCCa -3'
miRNA:   3'- cucuaCCGgCGGGGCCa----CAGGCu----CGG- -5'
5632 5' -62 NC_001806.1 + 70334 0.67 0.575307
Target:  5'- ---cUGGCCGCCCgGGggGUgcugcaggaccucgCCGAGCg -3'
miRNA:   3'- cucuACCGGCGGGgCCa-CA--------------GGCUCGg -5'
5632 5' -62 NC_001806.1 + 70660 0.66 0.656398
Target:  5'- cGAGcUGGCgGCCCaGGUGUCgcaCGAGg- -3'
miRNA:   3'- -CUCuACCGgCGGGgCCACAG---GCUCgg -5'
5632 5' -62 NC_001806.1 + 71649 0.67 0.607441
Target:  5'- uGGGUGGCgGaaacaacacuaaCCCCGGggGUCCGguccauaaacaGGCCg -3'
miRNA:   3'- cUCUACCGgC------------GGGGCCa-CAGGC-----------UCGG- -5'
5632 5' -62 NC_001806.1 + 72869 0.68 0.539765
Target:  5'- gGAGAUGGgcgUCGUCCCGGUugGUcggcaCCGGGCa -3'
miRNA:   3'- -CUCUACC---GGCGGGGCCA--CA-----GGCUCGg -5'
5632 5' -62 NC_001806.1 + 73460 0.71 0.373641
Target:  5'- cGGGGUGGCCGgCCCGGccgCCGcccuGCUg -3'
miRNA:   3'- -CUCUACCGGCgGGGCCacaGGCu---CGG- -5'
5632 5' -62 NC_001806.1 + 75399 0.69 0.499446
Target:  5'- aGGGUcGGCUGCCgCCgaccuugucguccaGGUGcgCCGGGCCg -3'
miRNA:   3'- cUCUA-CCGGCGG-GG--------------CCACa-GGCUCGG- -5'
5632 5' -62 NC_001806.1 + 76638 0.69 0.502217
Target:  5'- aAGGUGGUCGCcguCCCGGcGaCCGuGGCCa -3'
miRNA:   3'- cUCUACCGGCG---GGGCCaCaGGC-UCGG- -5'
5632 5' -62 NC_001806.1 + 79774 0.67 0.597674
Target:  5'- ----cGGUCGCCCCGGUuaCCGAuuucgcgcGCCc -3'
miRNA:   3'- cucuaCCGGCGGGGCCAcaGGCU--------CGG- -5'
5632 5' -62 NC_001806.1 + 80128 0.68 0.520859
Target:  5'- ----aGGCCGCaaCCCGG---CCGAGCCg -3'
miRNA:   3'- cucuaCCGGCG--GGGCCacaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 82123 0.68 0.520859
Target:  5'- aGGccGaGCCGCCCCuugauGGUGUCCaGGUCg -3'
miRNA:   3'- cUCuaC-CGGCGGGG-----CCACAGGcUCGG- -5'
5632 5' -62 NC_001806.1 + 91075 0.66 0.664213
Target:  5'- gGAGAc-GCCGCCCUGGcccucgagucuaucgUGUCgauggccgucuuugaCGAGCCg -3'
miRNA:   3'- -CUCUacCGGCGGGGCC---------------ACAG---------------GCUCGG- -5'
5632 5' -62 NC_001806.1 + 94005 1.1 0.000762
Target:  5'- cGAGAUGGCCGCCCCGGUGUCCGAGCCc -3'
miRNA:   3'- -CUCUACCGGCGGGGCCACAGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 102493 0.66 0.666164
Target:  5'- uGGccGGCCGCCCuCGGUcccgaucaCCGcGGCCa -3'
miRNA:   3'- cUCuaCCGGCGGG-GCCAca------GGC-UCGG- -5'
5632 5' -62 NC_001806.1 + 105148 0.75 0.22924
Target:  5'- cGGccGuGCCGCCCCagGGUG-CCGAGCCc -3'
miRNA:   3'- cUCuaC-CGGCGGGG--CCACaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 107029 0.71 0.381501
Target:  5'- cGGGuUGGCCGCCCgCGGgGcCgCGGGCUg -3'
miRNA:   3'- -CUCuACCGGCGGG-GCCaCaG-GCUCGG- -5'
5632 5' -62 NC_001806.1 + 107286 0.66 0.646613
Target:  5'- uAGggGGCCGCgugcugaccacCCCGGUcGUccaCCGGGCg -3'
miRNA:   3'- cUCuaCCGGCG-----------GGGCCA-CA---GGCUCGg -5'
5632 5' -62 NC_001806.1 + 112258 0.7 0.448196
Target:  5'- aGGGUGGCCcgggcgaCCCUGGUcgCCGAGCUa -3'
miRNA:   3'- cUCUACCGGc------GGGGCCAcaGGCUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.