miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5632 5' -62 NC_001806.1 + 27246 0.7 0.430911
Target:  5'- aGGGcgGGCCGCCUCGGgggcggGaCUG-GCCa -3'
miRNA:   3'- -CUCuaCCGGCGGGGCCa-----CaGGCuCGG- -5'
5632 5' -62 NC_001806.1 + 27850 0.7 0.405733
Target:  5'- gGGGAcggGGCCGCCCCgcGGUGggCCu-GCCu -3'
miRNA:   3'- -CUCUa--CCGGCGGGG--CCACa-GGcuCGG- -5'
5632 5' -62 NC_001806.1 + 28159 0.7 0.448196
Target:  5'- -uGAgGGCCGCCCCcagcgcgaGGUGaggggCCGGGCg -3'
miRNA:   3'- cuCUaCCGGCGGGG--------CCACa----GGCUCGg -5'
5632 5' -62 NC_001806.1 + 28943 0.67 0.58793
Target:  5'- ----aGcCCGCCCCGGaUGUCUGGGUg -3'
miRNA:   3'- cucuaCcGGCGGGGCC-ACAGGCUCGg -5'
5632 5' -62 NC_001806.1 + 31259 0.67 0.578215
Target:  5'- --aGUGGgCGCCCUGGacuUCCGcAGCCu -3'
miRNA:   3'- cucUACCgGCGGGGCCac-AGGC-UCGG- -5'
5632 5' -62 NC_001806.1 + 32977 0.68 0.539765
Target:  5'- uGGGuccGCCgggGCCCCGGg--CCGGGCCg -3'
miRNA:   3'- -CUCuacCGG---CGGGGCCacaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 33011 0.67 0.578215
Target:  5'- gGGGccGGCCGuuggcgguaaCCCCGaGUGUucaucucaggccCCGGGCCg -3'
miRNA:   3'- -CUCuaCCGGC----------GGGGC-CACA------------GGCUCGG- -5'
5632 5' -62 NC_001806.1 + 33347 0.7 0.397548
Target:  5'- ---uUGGCCGCCCCGGcUGcaggggggCCcggaGAGCCg -3'
miRNA:   3'- cucuACCGGCGGGGCC-ACa-------GG----CUCGG- -5'
5632 5' -62 NC_001806.1 + 34405 0.72 0.343316
Target:  5'- -cGGUGGCCGggCCGGg--CCGGGCCg -3'
miRNA:   3'- cuCUACCGGCggGGCCacaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 37846 0.69 0.456981
Target:  5'- gGGGugcuUGGCgcaCGCCCC-GUGUCCGcuGGCCu -3'
miRNA:   3'- -CUCu---ACCG---GCGGGGcCACAGGC--UCGG- -5'
5632 5' -62 NC_001806.1 + 44481 0.7 0.448196
Target:  5'- aGGGAUGGCUGCacgaCCguGGUG-CCGuuuGCCg -3'
miRNA:   3'- -CUCUACCGGCGg---GG--CCACaGGCu--CGG- -5'
5632 5' -62 NC_001806.1 + 56816 0.68 0.548349
Target:  5'- -cGGUGGUCGcCCCCGG-GcCCGccaacaccgccgcGGCCa -3'
miRNA:   3'- cuCUACCGGC-GGGGCCaCaGGC-------------UCGG- -5'
5632 5' -62 NC_001806.1 + 57033 0.69 0.474823
Target:  5'- uGGGUGGCCgGgCCCGGgg-CCGGGgCCc -3'
miRNA:   3'- cUCUACCGG-CgGGGCCacaGGCUC-GG- -5'
5632 5' -62 NC_001806.1 + 58796 0.68 0.530281
Target:  5'- aGGAacGCCGCCgUGG-GUCCGcGCCa -3'
miRNA:   3'- cUCUacCGGCGGgGCCaCAGGCuCGG- -5'
5632 5' -62 NC_001806.1 + 59122 0.68 0.539765
Target:  5'- cGAGGUGG--GCUUCGGUGgugagggcagCCGGGCCg -3'
miRNA:   3'- -CUCUACCggCGGGGCCACa---------GGCUCGG- -5'
5632 5' -62 NC_001806.1 + 61432 0.69 0.471226
Target:  5'- -cGAUGGCCGCCagcgccgCCGGgcucaggauauggcUGUCCGucggcGCCu -3'
miRNA:   3'- cuCUACCGGCGG-------GGCC--------------ACAGGCu----CGG- -5'
5632 5' -62 NC_001806.1 + 63394 0.72 0.328832
Target:  5'- -cGAUGGCCGCCCCcugGGUGUCguaGAuGUa -3'
miRNA:   3'- cuCUACCGGCGGGG---CCACAGg--CU-CGg -5'
5632 5' -62 NC_001806.1 + 65665 0.68 0.558897
Target:  5'- uGGGUGGCUGCgCUGGgg-CCGccGGCCu -3'
miRNA:   3'- cUCUACCGGCGgGGCCacaGGC--UCGG- -5'
5632 5' -62 NC_001806.1 + 66817 0.69 0.493006
Target:  5'- cGAGcggGGCCgGCCCgGGUGgCCGGugugcGCCg -3'
miRNA:   3'- -CUCua-CCGG-CGGGgCCACaGGCU-----CGG- -5'
5632 5' -62 NC_001806.1 + 67351 0.67 0.611353
Target:  5'- gGGGAgccgaucagGGCCGCCCCcccgcgcauGGUgccccgcaggaucuuGUCCaGGGCCu -3'
miRNA:   3'- -CUCUa--------CCGGCGGGG---------CCA---------------CAGG-CUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.