miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5632 5' -62 NC_001806.1 + 4626 0.69 0.474823
Target:  5'- -cGAUGGCCGCCaCCGGccgugacgacGUCUccgcggcggcuGGGCCg -3'
miRNA:   3'- cuCUACCGGCGG-GGCCa---------CAGG-----------CUCGG- -5'
5632 5' -62 NC_001806.1 + 57033 0.69 0.474823
Target:  5'- uGGGUGGCCgGgCCCGGgg-CCGGGgCCc -3'
miRNA:   3'- cUCUACCGG-CgGGGCCacaGGCUC-GG- -5'
5632 5' -62 NC_001806.1 + 118780 0.69 0.483873
Target:  5'- ----cGGCCGCCCCGGacUCgGgacGGCCg -3'
miRNA:   3'- cucuaCCGGCGGGGCCacAGgC---UCGG- -5'
5632 5' -62 NC_001806.1 + 24002 0.69 0.493006
Target:  5'- ---cUGGCgGCCCUGGccaaccggcUGUgCGGGCCg -3'
miRNA:   3'- cucuACCGgCGGGGCC---------ACAgGCUCGG- -5'
5632 5' -62 NC_001806.1 + 66817 0.69 0.493006
Target:  5'- cGAGcggGGCCgGCCCgGGUGgCCGGugugcGCCg -3'
miRNA:   3'- -CUCua-CCGG-CGGGgCCACaGGCU-----CGG- -5'
5632 5' -62 NC_001806.1 + 22871 0.69 0.493006
Target:  5'- -uGgcGGCCGUCCCGGggcugGcCgGGGCCc -3'
miRNA:   3'- cuCuaCCGGCGGGGCCa----CaGgCUCGG- -5'
5632 5' -62 NC_001806.1 + 75399 0.69 0.499446
Target:  5'- aGGGUcGGCUGCCgCCgaccuugucguccaGGUGcgCCGGGCCg -3'
miRNA:   3'- cUCUA-CCGGCGG-GG--------------CCACa-GGCUCGG- -5'
5632 5' -62 NC_001806.1 + 76638 0.69 0.502217
Target:  5'- aAGGUGGUCGCcguCCCGGcGaCCGuGGCCa -3'
miRNA:   3'- cUCUACCGGCG---GGGCCaCaGGC-UCGG- -5'
5632 5' -62 NC_001806.1 + 80128 0.68 0.520859
Target:  5'- ----aGGCCGCaaCCCGG---CCGAGCCg -3'
miRNA:   3'- cucuaCCGGCG--GGGCCacaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 82123 0.68 0.520859
Target:  5'- aGGccGaGCCGCCCCuugauGGUGUCCaGGUCg -3'
miRNA:   3'- cUCuaC-CGGCGGGG-----CCACAGGcUCGG- -5'
5632 5' -62 NC_001806.1 + 67842 0.68 0.529336
Target:  5'- ----gGGCCGCCCCGcagaaaGUccgcacccacgccGUCCGGGCUg -3'
miRNA:   3'- cucuaCCGGCGGGGC------CA-------------CAGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 58796 0.68 0.530281
Target:  5'- aGGAacGCCGCCgUGG-GUCCGcGCCa -3'
miRNA:   3'- cUCUacCGGCGGgGCCaCAGGCuCGG- -5'
5632 5' -62 NC_001806.1 + 67486 0.68 0.530281
Target:  5'- ---cUGGCCGCCcuCCGGgGUCCcgacccccugggGAGCCc -3'
miRNA:   3'- cucuACCGGCGG--GGCCaCAGG------------CUCGG- -5'
5632 5' -62 NC_001806.1 + 145166 0.68 0.539765
Target:  5'- -cGA-GGgCGCCCCGGUGUCguucaacaaaGAcGCCg -3'
miRNA:   3'- cuCUaCCgGCGGGGCCACAGg---------CU-CGG- -5'
5632 5' -62 NC_001806.1 + 22674 0.68 0.539765
Target:  5'- gGGGAUccucGCCGCCCUGGggcggcUGUCCGccgcGCCc -3'
miRNA:   3'- -CUCUAc---CGGCGGGGCC------ACAGGCu---CGG- -5'
5632 5' -62 NC_001806.1 + 32977 0.68 0.539765
Target:  5'- uGGGuccGCCgggGCCCCGGg--CCGGGCCg -3'
miRNA:   3'- -CUCuacCGG---CGGGGCCacaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 59122 0.68 0.539765
Target:  5'- cGAGGUGG--GCUUCGGUGgugagggcagCCGGGCCg -3'
miRNA:   3'- -CUCUACCggCGGGGCCACa---------GGCUCGG- -5'
5632 5' -62 NC_001806.1 + 72869 0.68 0.539765
Target:  5'- gGAGAUGGgcgUCGUCCCGGUugGUcggcaCCGGGCa -3'
miRNA:   3'- -CUCUACC---GGCGGGGCCA--CA-----GGCUCGg -5'
5632 5' -62 NC_001806.1 + 24694 0.68 0.539765
Target:  5'- ----cGGcCCGgCCCGGUGgCgCGGGCCg -3'
miRNA:   3'- cucuaCC-GGCgGGGCCACaG-GCUCGG- -5'
5632 5' -62 NC_001806.1 + 56816 0.68 0.548349
Target:  5'- -cGGUGGUCGcCCCCGG-GcCCGccaacaccgccgcGGCCa -3'
miRNA:   3'- cuCUACCGGC-GGGGCCaCaGGC-------------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.