Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5632 | 5' | -62 | NC_001806.1 | + | 68588 | 0.67 | 0.607441 |
Target: 5'- ----cGGCgGCCCUGGggccgGUCCGcguccGCCa -3' miRNA: 3'- cucuaCCGgCGGGGCCa----CAGGCu----CGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 23952 | 0.67 | 0.607441 |
Target: 5'- uGGGggGGCCGCCggagUGGUccgCCGAGCg -3' miRNA: 3'- -CUCuaCCGGCGGg---GCCAca-GGCUCGg -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 71649 | 0.67 | 0.607441 |
Target: 5'- uGGGUGGCgGaaacaacacuaaCCCCGGggGUCCGguccauaaacaGGCCg -3' miRNA: 3'- cUCUACCGgC------------GGGGCCa-CAGGC-----------UCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 79774 | 0.67 | 0.597674 |
Target: 5'- ----cGGUCGCCCCGGUuaCCGAuuucgcgcGCCc -3' miRNA: 3'- cucuaCCGGCGGGGCCAcaGGCU--------CGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 132986 | 0.67 | 0.597674 |
Target: 5'- -uGGUGGCCgcucccucagaGCCCUGGg--CCgGGGCCg -3' miRNA: 3'- cuCUACCGG-----------CGGGGCCacaGG-CUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 28943 | 0.67 | 0.58793 |
Target: 5'- ----aGcCCGCCCCGGaUGUCUGGGUg -3' miRNA: 3'- cucuaCcGGCGGGGCC-ACAGGCUCGg -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 31259 | 0.67 | 0.578215 |
Target: 5'- --aGUGGgCGCCCUGGacuUCCGcAGCCu -3' miRNA: 3'- cucUACCgGCGGGGCCac-AGGC-UCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 33011 | 0.67 | 0.578215 |
Target: 5'- gGGGccGGCCGuuggcgguaaCCCCGaGUGUucaucucaggccCCGGGCCg -3' miRNA: 3'- -CUCuaCCGGC----------GGGGC-CACA------------GGCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 150832 | 0.67 | 0.577245 |
Target: 5'- ----aGGCCGCCUCGGguguaacGUuagaccgaguucgCCGGGCCg -3' miRNA: 3'- cucuaCCGGCGGGGCCa------CA-------------GGCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 70334 | 0.67 | 0.575307 |
Target: 5'- ---cUGGCCGCCCgGGggGUgcugcaggaccucgCCGAGCg -3' miRNA: 3'- cucuACCGGCGGGgCCa-CA--------------GGCUCGg -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 5940 | 0.67 | 0.568536 |
Target: 5'- cGGGcgGGaCCGCCCCaaGGgggCgGGGCCg -3' miRNA: 3'- -CUCuaCC-GGCGGGG--CCacaGgCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 65665 | 0.68 | 0.558897 |
Target: 5'- uGGGUGGCUGCgCUGGgg-CCGccGGCCu -3' miRNA: 3'- cUCUACCGGCGgGGCCacaGGC--UCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 151294 | 0.68 | 0.558897 |
Target: 5'- cGGggGGCgGCggCGGUGggCCGGGCCu -3' miRNA: 3'- cUCuaCCGgCGggGCCACa-GGCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 4914 | 0.68 | 0.558897 |
Target: 5'- cGAGAcGG-CGuCCCCGGcGUCCucGCCg -3' miRNA: 3'- -CUCUaCCgGC-GGGGCCaCAGGcuCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 56816 | 0.68 | 0.548349 |
Target: 5'- -cGGUGGUCGcCCCCGG-GcCCGccaacaccgccgcGGCCa -3' miRNA: 3'- cuCUACCGGC-GGGGCCaCaGGC-------------UCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 24694 | 0.68 | 0.539765 |
Target: 5'- ----cGGcCCGgCCCGGUGgCgCGGGCCg -3' miRNA: 3'- cucuaCC-GGCgGGGCCACaG-GCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 72869 | 0.68 | 0.539765 |
Target: 5'- gGAGAUGGgcgUCGUCCCGGUugGUcggcaCCGGGCa -3' miRNA: 3'- -CUCUACC---GGCGGGGCCA--CA-----GGCUCGg -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 59122 | 0.68 | 0.539765 |
Target: 5'- cGAGGUGG--GCUUCGGUGgugagggcagCCGGGCCg -3' miRNA: 3'- -CUCUACCggCGGGGCCACa---------GGCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 22674 | 0.68 | 0.539765 |
Target: 5'- gGGGAUccucGCCGCCCUGGggcggcUGUCCGccgcGCCc -3' miRNA: 3'- -CUCUAc---CGGCGGGGCC------ACAGGCu---CGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 145166 | 0.68 | 0.539765 |
Target: 5'- -cGA-GGgCGCCCCGGUGUCguucaacaaaGAcGCCg -3' miRNA: 3'- cuCUaCCgGCGGGGCCACAGg---------CU-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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