miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5632 5' -62 NC_001806.1 + 32977 0.68 0.539765
Target:  5'- uGGGuccGCCgggGCCCCGGg--CCGGGCCg -3'
miRNA:   3'- -CUCuacCGG---CGGGGCCacaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 58796 0.68 0.530281
Target:  5'- aGGAacGCCGCCgUGG-GUCCGcGCCa -3'
miRNA:   3'- cUCUacCGGCGGgGCCaCAGGCuCGG- -5'
5632 5' -62 NC_001806.1 + 67486 0.68 0.530281
Target:  5'- ---cUGGCCGCCcuCCGGgGUCCcgacccccugggGAGCCc -3'
miRNA:   3'- cucuACCGGCGG--GGCCaCAGG------------CUCGG- -5'
5632 5' -62 NC_001806.1 + 67842 0.68 0.529336
Target:  5'- ----gGGCCGCCCCGcagaaaGUccgcacccacgccGUCCGGGCUg -3'
miRNA:   3'- cucuaCCGGCGGGGC------CA-------------CAGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 82123 0.68 0.520859
Target:  5'- aGGccGaGCCGCCCCuugauGGUGUCCaGGUCg -3'
miRNA:   3'- cUCuaC-CGGCGGGG-----CCACAGGcUCGG- -5'
5632 5' -62 NC_001806.1 + 80128 0.68 0.520859
Target:  5'- ----aGGCCGCaaCCCGG---CCGAGCCg -3'
miRNA:   3'- cucuaCCGGCG--GGGCCacaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 76638 0.69 0.502217
Target:  5'- aAGGUGGUCGCcguCCCGGcGaCCGuGGCCa -3'
miRNA:   3'- cUCUACCGGCG---GGGCCaCaGGC-UCGG- -5'
5632 5' -62 NC_001806.1 + 75399 0.69 0.499446
Target:  5'- aGGGUcGGCUGCCgCCgaccuugucguccaGGUGcgCCGGGCCg -3'
miRNA:   3'- cUCUA-CCGGCGG-GG--------------CCACa-GGCUCGG- -5'
5632 5' -62 NC_001806.1 + 66817 0.69 0.493006
Target:  5'- cGAGcggGGCCgGCCCgGGUGgCCGGugugcGCCg -3'
miRNA:   3'- -CUCua-CCGG-CGGGgCCACaGGCU-----CGG- -5'
5632 5' -62 NC_001806.1 + 22871 0.69 0.493006
Target:  5'- -uGgcGGCCGUCCCGGggcugGcCgGGGCCc -3'
miRNA:   3'- cuCuaCCGGCGGGGCCa----CaGgCUCGG- -5'
5632 5' -62 NC_001806.1 + 24002 0.69 0.493006
Target:  5'- ---cUGGCgGCCCUGGccaaccggcUGUgCGGGCCg -3'
miRNA:   3'- cucuACCGgCGGGGCC---------ACAgGCUCGG- -5'
5632 5' -62 NC_001806.1 + 118780 0.69 0.483873
Target:  5'- ----cGGCCGCCCCGGacUCgGgacGGCCg -3'
miRNA:   3'- cucuaCCGGCGGGGCCacAGgC---UCGG- -5'
5632 5' -62 NC_001806.1 + 4626 0.69 0.474823
Target:  5'- -cGAUGGCCGCCaCCGGccgugacgacGUCUccgcggcggcuGGGCCg -3'
miRNA:   3'- cuCUACCGGCGG-GGCCa---------CAGG-----------CUCGG- -5'
5632 5' -62 NC_001806.1 + 57033 0.69 0.474823
Target:  5'- uGGGUGGCCgGgCCCGGgg-CCGGGgCCc -3'
miRNA:   3'- cUCUACCGG-CgGGGCCacaGGCUC-GG- -5'
5632 5' -62 NC_001806.1 + 61432 0.69 0.471226
Target:  5'- -cGAUGGCCGCCagcgccgCCGGgcucaggauauggcUGUCCGucggcGCCu -3'
miRNA:   3'- cuCUACCGGCGG-------GGCC--------------ACAGGCu----CGG- -5'
5632 5' -62 NC_001806.1 + 144819 0.69 0.465858
Target:  5'- cGAGG-GGCC-CCCgaccgCGGcgGUCCGGGCCc -3'
miRNA:   3'- -CUCUaCCGGcGGG-----GCCa-CAGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 37846 0.69 0.456981
Target:  5'- gGGGugcuUGGCgcaCGCCCC-GUGUCCGcuGGCCu -3'
miRNA:   3'- -CUCu---ACCG---GCGGGGcCACAGGC--UCGG- -5'
5632 5' -62 NC_001806.1 + 28159 0.7 0.448196
Target:  5'- -uGAgGGCCGCCCCcagcgcgaGGUGaggggCCGGGCg -3'
miRNA:   3'- cuCUaCCGGCGGGG--------CCACa----GGCUCGg -5'
5632 5' -62 NC_001806.1 + 112258 0.7 0.448196
Target:  5'- aGGGUGGCCcgggcgaCCCUGGUcgCCGAGCUa -3'
miRNA:   3'- cUCUACCGGc------GGGGCCAcaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 44481 0.7 0.448196
Target:  5'- aGGGAUGGCUGCacgaCCguGGUG-CCGuuuGCCg -3'
miRNA:   3'- -CUCUACCGGCGg---GG--CCACaGGCu--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.