miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5632 5' -62 NC_001806.1 + 70334 0.67 0.575307
Target:  5'- ---cUGGCCGCCCgGGggGUgcugcaggaccucgCCGAGCg -3'
miRNA:   3'- cucuACCGGCGGGgCCa-CA--------------GGCUCGg -5'
5632 5' -62 NC_001806.1 + 5940 0.67 0.568536
Target:  5'- cGGGcgGGaCCGCCCCaaGGgggCgGGGCCg -3'
miRNA:   3'- -CUCuaCC-GGCGGGG--CCacaGgCUCGG- -5'
5632 5' -62 NC_001806.1 + 150832 0.67 0.577245
Target:  5'- ----aGGCCGCCUCGGguguaacGUuagaccgaguucgCCGGGCCg -3'
miRNA:   3'- cucuaCCGGCGGGGCCa------CA-------------GGCUCGG- -5'
5632 5' -62 NC_001806.1 + 28943 0.67 0.58793
Target:  5'- ----aGcCCGCCCCGGaUGUCUGGGUg -3'
miRNA:   3'- cucuaCcGGCGGGGCC-ACAGGCUCGg -5'
5632 5' -62 NC_001806.1 + 31259 0.67 0.578215
Target:  5'- --aGUGGgCGCCCUGGacuUCCGcAGCCu -3'
miRNA:   3'- cucUACCgGCGGGGCCac-AGGC-UCGG- -5'
5632 5' -62 NC_001806.1 + 132986 0.67 0.597674
Target:  5'- -uGGUGGCCgcucccucagaGCCCUGGg--CCgGGGCCg -3'
miRNA:   3'- cuCUACCGG-----------CGGGGCCacaGG-CUCGG- -5'
5632 5' -62 NC_001806.1 + 79774 0.67 0.597674
Target:  5'- ----cGGUCGCCCCGGUuaCCGAuuucgcgcGCCc -3'
miRNA:   3'- cucuaCCGGCGGGGCCAcaGGCU--------CGG- -5'
5632 5' -62 NC_001806.1 + 68588 0.67 0.607441
Target:  5'- ----cGGCgGCCCUGGggccgGUCCGcguccGCCa -3'
miRNA:   3'- cucuaCCGgCGGGGCCa----CAGGCu----CGG- -5'
5632 5' -62 NC_001806.1 + 147661 0.67 0.607441
Target:  5'- gGGGcgGGCggccggcucCGCCCCGGgggCCGGGgCg -3'
miRNA:   3'- -CUCuaCCG---------GCGGGGCCacaGGCUCgG- -5'
5632 5' -62 NC_001806.1 + 67351 0.67 0.611353
Target:  5'- gGGGAgccgaucagGGCCGCCCCcccgcgcauGGUgccccgcaggaucuuGUCCaGGGCCu -3'
miRNA:   3'- -CUCUa--------CCGGCGGGG---------CCA---------------CAGG-CUCGG- -5'
5632 5' -62 NC_001806.1 + 1548 0.67 0.617226
Target:  5'- ----cGGCCcgcGCCaCCGGg--CCGGGCCg -3'
miRNA:   3'- cucuaCCGG---CGG-GGCCacaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 56816 0.68 0.548349
Target:  5'- -cGGUGGUCGcCCCCGG-GcCCGccaacaccgccgcGGCCa -3'
miRNA:   3'- cuCUACCGGC-GGGGCCaCaGGC-------------UCGG- -5'
5632 5' -62 NC_001806.1 + 24694 0.68 0.539765
Target:  5'- ----cGGcCCGgCCCGGUGgCgCGGGCCg -3'
miRNA:   3'- cucuaCC-GGCgGGGCCACaG-GCUCGG- -5'
5632 5' -62 NC_001806.1 + 72869 0.68 0.539765
Target:  5'- gGAGAUGGgcgUCGUCCCGGUugGUcggcaCCGGGCa -3'
miRNA:   3'- -CUCUACC---GGCGGGGCCA--CA-----GGCUCGg -5'
5632 5' -62 NC_001806.1 + 59122 0.68 0.539765
Target:  5'- cGAGGUGG--GCUUCGGUGgugagggcagCCGGGCCg -3'
miRNA:   3'- -CUCUACCggCGGGGCCACa---------GGCUCGG- -5'
5632 5' -62 NC_001806.1 + 32977 0.68 0.539765
Target:  5'- uGGGuccGCCgggGCCCCGGg--CCGGGCCg -3'
miRNA:   3'- -CUCuacCGG---CGGGGCCacaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 151294 0.68 0.558897
Target:  5'- cGGggGGCgGCggCGGUGggCCGGGCCu -3'
miRNA:   3'- cUCuaCCGgCGggGCCACa-GGCUCGG- -5'
5632 5' -62 NC_001806.1 + 67842 0.68 0.529336
Target:  5'- ----gGGCCGCCCCGcagaaaGUccgcacccacgccGUCCGGGCUg -3'
miRNA:   3'- cucuaCCGGCGGGGC------CA-------------CAGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 82123 0.68 0.520859
Target:  5'- aGGccGaGCCGCCCCuugauGGUGUCCaGGUCg -3'
miRNA:   3'- cUCuaC-CGGCGGGG-----CCACAGGcUCGG- -5'
5632 5' -62 NC_001806.1 + 80128 0.68 0.520859
Target:  5'- ----aGGCCGCaaCCCGG---CCGAGCCg -3'
miRNA:   3'- cucuaCCGGCG--GGGCCacaGGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.