Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5632 | 5' | -62 | NC_001806.1 | + | 91075 | 0.66 | 0.664213 |
Target: 5'- gGAGAc-GCCGCCCUGGcccucgagucuaucgUGUCgauggccgucuuugaCGAGCCg -3' miRNA: 3'- -CUCUacCGGCGGGGCC---------------ACAG---------------GCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 82123 | 0.68 | 0.520859 |
Target: 5'- aGGccGaGCCGCCCCuugauGGUGUCCaGGUCg -3' miRNA: 3'- cUCuaC-CGGCGGGG-----CCACAGGcUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 80128 | 0.68 | 0.520859 |
Target: 5'- ----aGGCCGCaaCCCGG---CCGAGCCg -3' miRNA: 3'- cucuaCCGGCG--GGGCCacaGGCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 79774 | 0.67 | 0.597674 |
Target: 5'- ----cGGUCGCCCCGGUuaCCGAuuucgcgcGCCc -3' miRNA: 3'- cucuaCCGGCGGGGCCAcaGGCU--------CGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 76638 | 0.69 | 0.502217 |
Target: 5'- aAGGUGGUCGCcguCCCGGcGaCCGuGGCCa -3' miRNA: 3'- cUCUACCGGCG---GGGCCaCaGGC-UCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 75399 | 0.69 | 0.499446 |
Target: 5'- aGGGUcGGCUGCCgCCgaccuugucguccaGGUGcgCCGGGCCg -3' miRNA: 3'- cUCUA-CCGGCGG-GG--------------CCACa-GGCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 73460 | 0.71 | 0.373641 |
Target: 5'- cGGGGUGGCCGgCCCGGccgCCGcccuGCUg -3' miRNA: 3'- -CUCUACCGGCgGGGCCacaGGCu---CGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 72869 | 0.68 | 0.539765 |
Target: 5'- gGAGAUGGgcgUCGUCCCGGUugGUcggcaCCGGGCa -3' miRNA: 3'- -CUCUACC---GGCGGGGCCA--CA-----GGCUCGg -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 71649 | 0.67 | 0.607441 |
Target: 5'- uGGGUGGCgGaaacaacacuaaCCCCGGggGUCCGguccauaaacaGGCCg -3' miRNA: 3'- cUCUACCGgC------------GGGGCCa-CAGGC-----------UCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 70660 | 0.66 | 0.656398 |
Target: 5'- cGAGcUGGCgGCCCaGGUGUCgcaCGAGg- -3' miRNA: 3'- -CUCuACCGgCGGGgCCACAG---GCUCgg -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 70334 | 0.67 | 0.575307 |
Target: 5'- ---cUGGCCGCCCgGGggGUgcugcaggaccucgCCGAGCg -3' miRNA: 3'- cucuACCGGCGGGgCCa-CA--------------GGCUCGg -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 68588 | 0.67 | 0.607441 |
Target: 5'- ----cGGCgGCCCUGGggccgGUCCGcguccGCCa -3' miRNA: 3'- cucuaCCGgCGGGGCCa----CAGGCu----CGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 67842 | 0.68 | 0.529336 |
Target: 5'- ----gGGCCGCCCCGcagaaaGUccgcacccacgccGUCCGGGCUg -3' miRNA: 3'- cucuaCCGGCGGGGC------CA-------------CAGGCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 67486 | 0.68 | 0.530281 |
Target: 5'- ---cUGGCCGCCcuCCGGgGUCCcgacccccugggGAGCCc -3' miRNA: 3'- cucuACCGGCGG--GGCCaCAGG------------CUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 67351 | 0.67 | 0.611353 |
Target: 5'- gGGGAgccgaucagGGCCGCCCCcccgcgcauGGUgccccgcaggaucuuGUCCaGGGCCu -3' miRNA: 3'- -CUCUa--------CCGGCGGGG---------CCA---------------CAGG-CUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 66817 | 0.69 | 0.493006 |
Target: 5'- cGAGcggGGCCgGCCCgGGUGgCCGGugugcGCCg -3' miRNA: 3'- -CUCua-CCGG-CGGGgCCACaGGCU-----CGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 65665 | 0.68 | 0.558897 |
Target: 5'- uGGGUGGCUGCgCUGGgg-CCGccGGCCu -3' miRNA: 3'- cUCUACCGGCGgGGCCacaGGC--UCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 63394 | 0.72 | 0.328832 |
Target: 5'- -cGAUGGCCGCCCCcugGGUGUCguaGAuGUa -3' miRNA: 3'- cuCUACCGGCGGGG---CCACAGg--CU-CGg -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 61432 | 0.69 | 0.471226 |
Target: 5'- -cGAUGGCCGCCagcgccgCCGGgcucaggauauggcUGUCCGucggcGCCu -3' miRNA: 3'- cuCUACCGGCGG-------GGCC--------------ACAGGCu----CGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 59122 | 0.68 | 0.539765 |
Target: 5'- cGAGGUGG--GCUUCGGUGgugagggcagCCGGGCCg -3' miRNA: 3'- -CUCUACCggCGGGGCCACa---------GGCUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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