miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5632 5' -62 NC_001806.1 + 151294 0.68 0.558897
Target:  5'- cGGggGGCgGCggCGGUGggCCGGGCCu -3'
miRNA:   3'- cUCuaCCGgCGggGCCACa-GGCUCGG- -5'
5632 5' -62 NC_001806.1 + 150832 0.67 0.577245
Target:  5'- ----aGGCCGCCUCGGguguaacGUuagaccgaguucgCCGGGCCg -3'
miRNA:   3'- cucuaCCGGCGGGGCCa------CA-------------GGCUCGG- -5'
5632 5' -62 NC_001806.1 + 148085 0.74 0.250898
Target:  5'- -cGAUGGgCGCCgaGGggggcgcUGUCCGAGCCg -3'
miRNA:   3'- cuCUACCgGCGGggCC-------ACAGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 147661 0.67 0.607441
Target:  5'- gGGGcgGGCggccggcucCGCCCCGGgggCCGGGgCg -3'
miRNA:   3'- -CUCuaCCG---------GCGGGGCCacaGGCUCgG- -5'
5632 5' -62 NC_001806.1 + 147223 0.72 0.343316
Target:  5'- aGAGgcGGCC-CCCgCGGggGUCgGGGCCg -3'
miRNA:   3'- -CUCuaCCGGcGGG-GCCa-CAGgCUCGG- -5'
5632 5' -62 NC_001806.1 + 145166 0.68 0.539765
Target:  5'- -cGA-GGgCGCCCCGGUGUCguucaacaaaGAcGCCg -3'
miRNA:   3'- cuCUaCCgGCGGGGCCACAGg---------CU-CGG- -5'
5632 5' -62 NC_001806.1 + 144819 0.69 0.465858
Target:  5'- cGAGG-GGCC-CCCgaccgCGGcgGUCCGGGCCc -3'
miRNA:   3'- -CUCUaCCGGcGGG-----GCCa-CAGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 144576 0.66 0.646613
Target:  5'- ----gGGCgCGUCCgGGUGccgcggcucUCCGGGCCc -3'
miRNA:   3'- cucuaCCG-GCGGGgCCAC---------AGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 134983 0.7 0.430911
Target:  5'- -cGgcGGCCaUCCCGGUGcCCGAuGCCc -3'
miRNA:   3'- cuCuaCCGGcGGGGCCACaGGCU-CGG- -5'
5632 5' -62 NC_001806.1 + 134245 0.66 0.675906
Target:  5'- cGGGggGGCgGCCCCGGcagCCggaaugagGAGCUc -3'
miRNA:   3'- -CUCuaCCGgCGGGGCCacaGG--------CUCGG- -5'
5632 5' -62 NC_001806.1 + 132986 0.67 0.597674
Target:  5'- -uGGUGGCCgcucccucagaGCCCUGGg--CCgGGGCCg -3'
miRNA:   3'- cuCUACCGG-----------CGGGGCCacaGG-CUCGG- -5'
5632 5' -62 NC_001806.1 + 131969 0.66 0.656398
Target:  5'- ---cUGGCgGCCCUGGagcgccagaCCGGGCCg -3'
miRNA:   3'- cucuACCGgCGGGGCCaca------GGCUCGG- -5'
5632 5' -62 NC_001806.1 + 131495 0.66 0.646613
Target:  5'- cGAGG-GGCCaaguuggcCCCCGGac-CCGGGCCg -3'
miRNA:   3'- -CUCUaCCGGc-------GGGGCCacaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 118780 0.69 0.483873
Target:  5'- ----cGGCCGCCCCGGacUCgGgacGGCCg -3'
miRNA:   3'- cucuaCCGGCGGGGCCacAGgC---UCGG- -5'
5632 5' -62 NC_001806.1 + 112258 0.7 0.448196
Target:  5'- aGGGUGGCCcgggcgaCCCUGGUcgCCGAGCUa -3'
miRNA:   3'- cUCUACCGGc------GGGGCCAcaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 107286 0.66 0.646613
Target:  5'- uAGggGGCCGCgugcugaccacCCCGGUcGUccaCCGGGCg -3'
miRNA:   3'- cUCuaCCGGCG-----------GGGCCA-CA---GGCUCGg -5'
5632 5' -62 NC_001806.1 + 107029 0.71 0.381501
Target:  5'- cGGGuUGGCCGCCCgCGGgGcCgCGGGCUg -3'
miRNA:   3'- -CUCuACCGGCGGG-GCCaCaG-GCUCGG- -5'
5632 5' -62 NC_001806.1 + 105148 0.75 0.22924
Target:  5'- cGGccGuGCCGCCCCagGGUG-CCGAGCCc -3'
miRNA:   3'- cUCuaC-CGGCGGGG--CCACaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 102493 0.66 0.666164
Target:  5'- uGGccGGCCGCCCuCGGUcccgaucaCCGcGGCCa -3'
miRNA:   3'- cUCuaCCGGCGGG-GCCAca------GGC-UCGG- -5'
5632 5' -62 NC_001806.1 + 94005 1.1 0.000762
Target:  5'- cGAGAUGGCCGCCCCGGUGUCCGAGCCc -3'
miRNA:   3'- -CUCUACCGGCGGGGCCACAGGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.