miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5632 5' -62 NC_001806.1 + 134245 0.66 0.675906
Target:  5'- cGGGggGGCgGCCCCGGcagCCggaaugagGAGCUc -3'
miRNA:   3'- -CUCuaCCGgCGGGGCCacaGG--------CUCGG- -5'
5632 5' -62 NC_001806.1 + 27246 0.7 0.430911
Target:  5'- aGGGcgGGCCGCCUCGGgggcggGaCUG-GCCa -3'
miRNA:   3'- -CUCuaCCGGCGGGGCCa-----CaGGCuCGG- -5'
5632 5' -62 NC_001806.1 + 134983 0.7 0.430911
Target:  5'- -cGgcGGCCaUCCCGGUGcCCGAuGCCc -3'
miRNA:   3'- cuCuaCCGGcGGGGCCACaGGCU-CGG- -5'
5632 5' -62 NC_001806.1 + 44481 0.7 0.448196
Target:  5'- aGGGAUGGCUGCacgaCCguGGUG-CCGuuuGCCg -3'
miRNA:   3'- -CUCUACCGGCGg---GG--CCACaGGCu--CGG- -5'
5632 5' -62 NC_001806.1 + 112258 0.7 0.448196
Target:  5'- aGGGUGGCCcgggcgaCCCUGGUcgCCGAGCUa -3'
miRNA:   3'- cUCUACCGGc------GGGGCCAcaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 28159 0.7 0.448196
Target:  5'- -uGAgGGCCGCCCCcagcgcgaGGUGaggggCCGGGCg -3'
miRNA:   3'- cuCUaCCGGCGGGG--------CCACa----GGCUCGg -5'
5632 5' -62 NC_001806.1 + 37846 0.69 0.456981
Target:  5'- gGGGugcuUGGCgcaCGCCCC-GUGUCCGcuGGCCu -3'
miRNA:   3'- -CUCu---ACCG---GCGGGGcCACAGGC--UCGG- -5'
5632 5' -62 NC_001806.1 + 144819 0.69 0.465858
Target:  5'- cGAGG-GGCC-CCCgaccgCGGcgGUCCGGGCCc -3'
miRNA:   3'- -CUCUaCCGGcGGG-----GCCa-CAGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 61432 0.69 0.471226
Target:  5'- -cGAUGGCCGCCagcgccgCCGGgcucaggauauggcUGUCCGucggcGCCu -3'
miRNA:   3'- cuCUACCGGCGG-------GGCC--------------ACAGGCu----CGG- -5'
5632 5' -62 NC_001806.1 + 27850 0.7 0.405733
Target:  5'- gGGGAcggGGCCGCCCCgcGGUGggCCu-GCCu -3'
miRNA:   3'- -CUCUa--CCGGCGGGG--CCACa-GGcuCGG- -5'
5632 5' -62 NC_001806.1 + 33347 0.7 0.397548
Target:  5'- ---uUGGCCGCCCCGGcUGcaggggggCCcggaGAGCCg -3'
miRNA:   3'- cucuACCGGCGGGGCC-ACa-------GG----CUCGG- -5'
5632 5' -62 NC_001806.1 + 107029 0.71 0.381501
Target:  5'- cGGGuUGGCCGCCCgCGGgGcCgCGGGCUg -3'
miRNA:   3'- -CUCuACCGGCGGG-GCCaCaG-GCUCGG- -5'
5632 5' -62 NC_001806.1 + 105148 0.75 0.22924
Target:  5'- cGGccGuGCCGCCCCagGGUG-CCGAGCCc -3'
miRNA:   3'- cUCuaC-CGGCGGGG--CCACaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 148085 0.74 0.250898
Target:  5'- -cGAUGGgCGCCgaGGggggcgcUGUCCGAGCCg -3'
miRNA:   3'- cuCUACCgGCGGggCC-------ACAGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 26930 0.74 0.251475
Target:  5'- cGGGUGcGCCa-CCUGGUGUCUGGGCCu -3'
miRNA:   3'- cUCUAC-CGGcgGGGCCACAGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 2925 0.73 0.301233
Target:  5'- -cGcgGGCCGCCgccuCCGGgcggCCGGGCCg -3'
miRNA:   3'- cuCuaCCGGCGG----GGCCaca-GGCUCGG- -5'
5632 5' -62 NC_001806.1 + 63394 0.72 0.328832
Target:  5'- -cGAUGGCCGCCCCcugGGUGUCguaGAuGUa -3'
miRNA:   3'- cuCUACCGGCGGGG---CCACAGg--CU-CGg -5'
5632 5' -62 NC_001806.1 + 34405 0.72 0.343316
Target:  5'- -cGGUGGCCGggCCGGg--CCGGGCCg -3'
miRNA:   3'- cuCUACCGGCggGGCCacaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 147223 0.72 0.343316
Target:  5'- aGAGgcGGCC-CCCgCGGggGUCgGGGCCg -3'
miRNA:   3'- -CUCuaCCGGcGGG-GCCa-CAGgCUCGG- -5'
5632 5' -62 NC_001806.1 + 73460 0.71 0.373641
Target:  5'- cGGGGUGGCCGgCCCGGccgCCGcccuGCUg -3'
miRNA:   3'- -CUCUACCGGCgGGGCCacaGGCu---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.