Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5632 | 5' | -62 | NC_001806.1 | + | 134245 | 0.66 | 0.675906 |
Target: 5'- cGGGggGGCgGCCCCGGcagCCggaaugagGAGCUc -3' miRNA: 3'- -CUCuaCCGgCGGGGCCacaGG--------CUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 27246 | 0.7 | 0.430911 |
Target: 5'- aGGGcgGGCCGCCUCGGgggcggGaCUG-GCCa -3' miRNA: 3'- -CUCuaCCGGCGGGGCCa-----CaGGCuCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 134983 | 0.7 | 0.430911 |
Target: 5'- -cGgcGGCCaUCCCGGUGcCCGAuGCCc -3' miRNA: 3'- cuCuaCCGGcGGGGCCACaGGCU-CGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 44481 | 0.7 | 0.448196 |
Target: 5'- aGGGAUGGCUGCacgaCCguGGUG-CCGuuuGCCg -3' miRNA: 3'- -CUCUACCGGCGg---GG--CCACaGGCu--CGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 112258 | 0.7 | 0.448196 |
Target: 5'- aGGGUGGCCcgggcgaCCCUGGUcgCCGAGCUa -3' miRNA: 3'- cUCUACCGGc------GGGGCCAcaGGCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 28159 | 0.7 | 0.448196 |
Target: 5'- -uGAgGGCCGCCCCcagcgcgaGGUGaggggCCGGGCg -3' miRNA: 3'- cuCUaCCGGCGGGG--------CCACa----GGCUCGg -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 37846 | 0.69 | 0.456981 |
Target: 5'- gGGGugcuUGGCgcaCGCCCC-GUGUCCGcuGGCCu -3' miRNA: 3'- -CUCu---ACCG---GCGGGGcCACAGGC--UCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 144819 | 0.69 | 0.465858 |
Target: 5'- cGAGG-GGCC-CCCgaccgCGGcgGUCCGGGCCc -3' miRNA: 3'- -CUCUaCCGGcGGG-----GCCa-CAGGCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 61432 | 0.69 | 0.471226 |
Target: 5'- -cGAUGGCCGCCagcgccgCCGGgcucaggauauggcUGUCCGucggcGCCu -3' miRNA: 3'- cuCUACCGGCGG-------GGCC--------------ACAGGCu----CGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 27850 | 0.7 | 0.405733 |
Target: 5'- gGGGAcggGGCCGCCCCgcGGUGggCCu-GCCu -3' miRNA: 3'- -CUCUa--CCGGCGGGG--CCACa-GGcuCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 33347 | 0.7 | 0.397548 |
Target: 5'- ---uUGGCCGCCCCGGcUGcaggggggCCcggaGAGCCg -3' miRNA: 3'- cucuACCGGCGGGGCC-ACa-------GG----CUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 107029 | 0.71 | 0.381501 |
Target: 5'- cGGGuUGGCCGCCCgCGGgGcCgCGGGCUg -3' miRNA: 3'- -CUCuACCGGCGGG-GCCaCaG-GCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 105148 | 0.75 | 0.22924 |
Target: 5'- cGGccGuGCCGCCCCagGGUG-CCGAGCCc -3' miRNA: 3'- cUCuaC-CGGCGGGG--CCACaGGCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 148085 | 0.74 | 0.250898 |
Target: 5'- -cGAUGGgCGCCgaGGggggcgcUGUCCGAGCCg -3' miRNA: 3'- cuCUACCgGCGGggCC-------ACAGGCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 26930 | 0.74 | 0.251475 |
Target: 5'- cGGGUGcGCCa-CCUGGUGUCUGGGCCu -3' miRNA: 3'- cUCUAC-CGGcgGGGCCACAGGCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 2925 | 0.73 | 0.301233 |
Target: 5'- -cGcgGGCCGCCgccuCCGGgcggCCGGGCCg -3' miRNA: 3'- cuCuaCCGGCGG----GGCCaca-GGCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 63394 | 0.72 | 0.328832 |
Target: 5'- -cGAUGGCCGCCCCcugGGUGUCguaGAuGUa -3' miRNA: 3'- cuCUACCGGCGGGG---CCACAGg--CU-CGg -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 34405 | 0.72 | 0.343316 |
Target: 5'- -cGGUGGCCGggCCGGg--CCGGGCCg -3' miRNA: 3'- cuCUACCGGCggGGCCacaGGCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 147223 | 0.72 | 0.343316 |
Target: 5'- aGAGgcGGCC-CCCgCGGggGUCgGGGCCg -3' miRNA: 3'- -CUCuaCCGGcGGG-GCCa-CAGgCUCGG- -5' |
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5632 | 5' | -62 | NC_001806.1 | + | 73460 | 0.71 | 0.373641 |
Target: 5'- cGGGGUGGCCGgCCCGGccgCCGcccuGCUg -3' miRNA: 3'- -CUCUACCGGCgGGGCCacaGGCu---CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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