miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5632 5' -62 NC_001806.1 + 1548 0.67 0.617226
Target:  5'- ----cGGCCcgcGCCaCCGGg--CCGGGCCg -3'
miRNA:   3'- cucuaCCGG---CGG-GGCCacaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 1768 0.66 0.636819
Target:  5'- gGGGAcaugGGCa--CCgGcGUGUCCGGGCCg -3'
miRNA:   3'- -CUCUa---CCGgcgGGgC-CACAGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 2863 0.66 0.675906
Target:  5'- gGAGggGGgCGCg--GGcGUCCGAGCCg -3'
miRNA:   3'- -CUCuaCCgGCGgggCCaCAGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 2925 0.73 0.301233
Target:  5'- -cGcgGGCCGCCgccuCCGGgcggCCGGGCCg -3'
miRNA:   3'- cuCuaCCGGCGG----GGCCaca-GGCUCGG- -5'
5632 5' -62 NC_001806.1 + 4626 0.69 0.474823
Target:  5'- -cGAUGGCCGCCaCCGGccgugacgacGUCUccgcggcggcuGGGCCg -3'
miRNA:   3'- cuCUACCGGCGG-GGCCa---------CAGG-----------CUCGG- -5'
5632 5' -62 NC_001806.1 + 4914 0.68 0.558897
Target:  5'- cGAGAcGG-CGuCCCCGGcGUCCucGCCg -3'
miRNA:   3'- -CUCUaCCgGC-GGGGCCaCAGGcuCGG- -5'
5632 5' -62 NC_001806.1 + 5092 0.66 0.646613
Target:  5'- uGGgcGGCgGCCCguCGGUGgggCCcgggGAGCCg -3'
miRNA:   3'- cUCuaCCGgCGGG--GCCACa--GG----CUCGG- -5'
5632 5' -62 NC_001806.1 + 5837 0.66 0.636819
Target:  5'- ---uUGGCCGuCCCCGGgccccccgGUCCcgcccGCCg -3'
miRNA:   3'- cucuACCGGC-GGGGCCa-------CAGGcu---CGG- -5'
5632 5' -62 NC_001806.1 + 5940 0.67 0.568536
Target:  5'- cGGGcgGGaCCGCCCCaaGGgggCgGGGCCg -3'
miRNA:   3'- -CUCuaCC-GGCGGGG--CCacaGgCUCGG- -5'
5632 5' -62 NC_001806.1 + 9550 0.66 0.62604
Target:  5'- cGGGAccUGGUCGCguucuccCUCGcUGUCCGAGCUc -3'
miRNA:   3'- -CUCU--ACCGGCG-------GGGCcACAGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 21429 0.66 0.62702
Target:  5'- -----cGCCGCCCCGGacccccgccuUUCGAGCCg -3'
miRNA:   3'- cucuacCGGCGGGGCCac--------AGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 21808 0.66 0.656398
Target:  5'- cGGGcgGacGCCGCCCCc--GcCCGGGCCa -3'
miRNA:   3'- -CUCuaC--CGGCGGGGccaCaGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 22167 0.66 0.656398
Target:  5'- cGAGGccucGGgCGCCCCGGcggccgUGUgggcgcCCGAGCUg -3'
miRNA:   3'- -CUCUa---CCgGCGGGGCC------ACA------GGCUCGG- -5'
5632 5' -62 NC_001806.1 + 22674 0.68 0.539765
Target:  5'- gGGGAUccucGCCGCCCUGGggcggcUGUCCGccgcGCCc -3'
miRNA:   3'- -CUCUAc---CGGCGGGGCC------ACAGGCu---CGG- -5'
5632 5' -62 NC_001806.1 + 22871 0.69 0.493006
Target:  5'- -uGgcGGCCGUCCCGGggcugGcCgGGGCCc -3'
miRNA:   3'- cuCuaCCGGCGGGGCCa----CaGgCUCGG- -5'
5632 5' -62 NC_001806.1 + 23952 0.67 0.607441
Target:  5'- uGGGggGGCCGCCggagUGGUccgCCGAGCg -3'
miRNA:   3'- -CUCuaCCGGCGGg---GCCAca-GGCUCGg -5'
5632 5' -62 NC_001806.1 + 24002 0.69 0.493006
Target:  5'- ---cUGGCgGCCCUGGccaaccggcUGUgCGGGCCg -3'
miRNA:   3'- cucuACCGgCGGGGCC---------ACAgGCUCGG- -5'
5632 5' -62 NC_001806.1 + 24694 0.68 0.539765
Target:  5'- ----cGGcCCGgCCCGGUGgCgCGGGCCg -3'
miRNA:   3'- cucuaCC-GGCgGGGCCACaG-GCUCGG- -5'
5632 5' -62 NC_001806.1 + 26930 0.74 0.251475
Target:  5'- cGGGUGcGCCa-CCUGGUGUCUGGGCCu -3'
miRNA:   3'- cUCUAC-CGGcgGGGCCACAGGCUCGG- -5'
5632 5' -62 NC_001806.1 + 26994 0.66 0.636819
Target:  5'- cGAGcgGGCCGaccgggCUCGGU-UCCGGcGCCg -3'
miRNA:   3'- -CUCuaCCGGCg-----GGGCCAcAGGCU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.