Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5636 | 3' | -57.6 | NC_001806.1 | + | 2681 | 0.66 | 0.84369 |
Target: 5'- -cG-CCgUGugGCUGGGCCCcggGgGCu -3' miRNA: 3'- uaCaGGgACugCGACCUGGGca-UgCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 4651 | 0.66 | 0.827348 |
Target: 5'- -cGUCUCcgcGGCgGCUGGGCCgGcggGCGCg -3' miRNA: 3'- uaCAGGGa--CUG-CGACCUGGgCa--UGCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 5394 | 0.66 | 0.838864 |
Target: 5'- cUGUCUCUGGCGgUcccgcgucgggucguGGAUCCGUgucggcagccGCGCu -3' miRNA: 3'- uACAGGGACUGCgA---------------CCUGGGCA----------UGCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 15064 | 0.66 | 0.84369 |
Target: 5'- gGUGUCUUcgGGCGaCUGGuCUCGggGCGCg -3' miRNA: 3'- -UACAGGGa-CUGC-GACCuGGGCa-UGCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 22299 | 0.68 | 0.74614 |
Target: 5'- -gGUCCCcggggacgUGGCGCUGGACCaGgccUGCu -3' miRNA: 3'- uaCAGGG--------ACUGCGACCUGGgCau-GCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 22878 | 0.67 | 0.810312 |
Target: 5'- -cGUCCCggGGCugGCcgGGGCCCGgccCGCc -3' miRNA: 3'- uaCAGGGa-CUG--CGa-CCUGGGCau-GCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 23818 | 0.71 | 0.586253 |
Target: 5'- uUGgccCCCUGcGCGCcucGGGCCCGcUGCGCc -3' miRNA: 3'- uACa--GGGAC-UGCGa--CCUGGGC-AUGCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 28506 | 0.66 | 0.851581 |
Target: 5'- -gGcCCCUuugacucaGACGCaGGGCCCGggguCGCc -3' miRNA: 3'- uaCaGGGA--------CUGCGaCCUGGGCau--GCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 30194 | 0.68 | 0.716993 |
Target: 5'- -cGUCCgCgGcCGCgucgGGACCCGcGCGCc -3' miRNA: 3'- uaCAGG-GaCuGCGa---CCUGGGCaUGCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 42402 | 0.7 | 0.646904 |
Target: 5'- ---cCCCaGACGCUGGGCCUGaa-GCa -3' miRNA: 3'- uacaGGGaCUGCGACCUGGGCaugCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 49356 | 0.69 | 0.707124 |
Target: 5'- -cGUCCCggcaGCGCcccGGGCCCG-AUGCg -3' miRNA: 3'- uaCAGGGac--UGCGa--CCUGGGCaUGCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 50186 | 0.67 | 0.792642 |
Target: 5'- -gGUCCCUGcUGUacUGG-CCCGgggUGCGCg -3' miRNA: 3'- uaCAGGGACuGCG--ACCuGGGC---AUGCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 54124 | 0.69 | 0.697192 |
Target: 5'- gGUGUCCC-GGgGCccagGGGCCgGUAgGCg -3' miRNA: 3'- -UACAGGGaCUgCGa---CCUGGgCAUgCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 56807 | 0.72 | 0.517031 |
Target: 5'- -aGUCCCUGGCGgUGGucgccCCCGggccCGCc -3' miRNA: 3'- uaCAGGGACUGCgACCu----GGGCau--GCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 67014 | 0.75 | 0.379734 |
Target: 5'- -cGUCCCgcgguaguuggccgUGACG-UGGGCCCGUACcGCa -3' miRNA: 3'- uaCAGGG--------------ACUGCgACCUGGGCAUG-CG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 68552 | 0.7 | 0.606414 |
Target: 5'- -cGUCCCauGCGCUGGAuUCCGccggccUGCGCa -3' miRNA: 3'- uaCAGGGacUGCGACCU-GGGC------AUGCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 76270 | 0.7 | 0.636779 |
Target: 5'- ----gCgUGGCGCUGGACCUGgcCGCc -3' miRNA: 3'- uacagGgACUGCGACCUGGGCauGCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 76649 | 0.75 | 0.358927 |
Target: 5'- -cGUCCCggcgaccguggccaaGACGCUGGACCag-GCGCg -3' miRNA: 3'- uaCAGGGa--------------CUGCGACCUGGgcaUGCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 78310 | 0.68 | 0.752823 |
Target: 5'- cUGgcgCCCUGGCGCUcgguccccgagcugGGAaCCGaGCGCg -3' miRNA: 3'- uACa--GGGACUGCGA--------------CCUgGGCaUGCG- -5' |
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5636 | 3' | -57.6 | NC_001806.1 | + | 80774 | 0.67 | 0.818913 |
Target: 5'- uAUGUCUCUGACGaCgaaGACuCCG-ACGCc -3' miRNA: 3'- -UACAGGGACUGC-Gac-CUG-GGCaUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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