miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5636 3' -57.6 NC_001806.1 + 28506 0.66 0.851581
Target:  5'- -gGcCCCUuugacucaGACGCaGGGCCCGggguCGCc -3'
miRNA:   3'- uaCaGGGA--------CUGCGaCCUGGGCau--GCG- -5'
5636 3' -57.6 NC_001806.1 + 76270 0.7 0.636779
Target:  5'- ----gCgUGGCGCUGGACCUGgcCGCc -3'
miRNA:   3'- uacagGgACUGCGACCUGGGCauGCG- -5'
5636 3' -57.6 NC_001806.1 + 42402 0.7 0.646904
Target:  5'- ---cCCCaGACGCUGGGCCUGaa-GCa -3'
miRNA:   3'- uacaGGGaCUGCGACCUGGGCaugCG- -5'
5636 3' -57.6 NC_001806.1 + 54124 0.69 0.697192
Target:  5'- gGUGUCCC-GGgGCccagGGGCCgGUAgGCg -3'
miRNA:   3'- -UACAGGGaCUgCGa---CCUGGgCAUgCG- -5'
5636 3' -57.6 NC_001806.1 + 131937 0.69 0.707124
Target:  5'- -cGaCUCUGugGC-GGGCgCUGUACGCg -3'
miRNA:   3'- uaCaGGGACugCGaCCUG-GGCAUGCG- -5'
5636 3' -57.6 NC_001806.1 + 49356 0.69 0.707124
Target:  5'- -cGUCCCggcaGCGCcccGGGCCCG-AUGCg -3'
miRNA:   3'- uaCAGGGac--UGCGa--CCUGGGCaUGCG- -5'
5636 3' -57.6 NC_001806.1 + 30194 0.68 0.716993
Target:  5'- -cGUCCgCgGcCGCgucgGGACCCGcGCGCc -3'
miRNA:   3'- uaCAGG-GaCuGCGa---CCUGGGCaUGCG- -5'
5636 3' -57.6 NC_001806.1 + 22299 0.68 0.74614
Target:  5'- -gGUCCCcggggacgUGGCGCUGGACCaGgccUGCu -3'
miRNA:   3'- uaCAGGG--------ACUGCGACCUGGgCau-GCG- -5'
5636 3' -57.6 NC_001806.1 + 78310 0.68 0.752823
Target:  5'- cUGgcgCCCUGGCGCUcgguccccgagcugGGAaCCGaGCGCg -3'
miRNA:   3'- uACa--GGGACUGCGA--------------CCUgGGCaUGCG- -5'
5636 3' -57.6 NC_001806.1 + 122925 0.7 0.626651
Target:  5'- -cGUCCC-GACGCcagGGACCaCGgucuggugGCGCu -3'
miRNA:   3'- uaCAGGGaCUGCGa--CCUGG-GCa-------UGCG- -5'
5636 3' -57.6 NC_001806.1 + 68552 0.7 0.606414
Target:  5'- -cGUCCCauGCGCUGGAuUCCGccggccUGCGCa -3'
miRNA:   3'- uaCAGGGacUGCGACCU-GGGC------AUGCG- -5'
5636 3' -57.6 NC_001806.1 + 23818 0.71 0.586253
Target:  5'- uUGgccCCCUGcGCGCcucGGGCCCGcUGCGCc -3'
miRNA:   3'- uACa--GGGAC-UGCGa--CCUGGGC-AUGCG- -5'
5636 3' -57.6 NC_001806.1 + 76649 0.75 0.358927
Target:  5'- -cGUCCCggcgaccguggccaaGACGCUGGACCag-GCGCg -3'
miRNA:   3'- uaCAGGGa--------------CUGCGACCUGGgcaUGCG- -5'
5636 3' -57.6 NC_001806.1 + 67014 0.75 0.379734
Target:  5'- -cGUCCCgcgguaguuggccgUGACG-UGGGCCCGUACcGCa -3'
miRNA:   3'- uaCAGGG--------------ACUGCgACCUGGGCAUG-CG- -5'
5636 3' -57.6 NC_001806.1 + 86709 0.73 0.433381
Target:  5'- cGUGUCCCcguagaUGAUGCgcauggaauaGGGCCCGgggGCGCg -3'
miRNA:   3'- -UACAGGG------ACUGCGa---------CCUGGGCa--UGCG- -5'
5636 3' -57.6 NC_001806.1 + 106747 0.72 0.507391
Target:  5'- -gGUCCCUGACGC-GGGCCgacaaCGgcuccGCGCu -3'
miRNA:   3'- uaCAGGGACUGCGaCCUGG-----GCa----UGCG- -5'
5636 3' -57.6 NC_001806.1 + 56807 0.72 0.517031
Target:  5'- -aGUCCCUGGCGgUGGucgccCCCGggccCGCc -3'
miRNA:   3'- uaCAGGGACUGCgACCu----GGGCau--GCG- -5'
5636 3' -57.6 NC_001806.1 + 86159 0.72 0.517031
Target:  5'- -gGUCCUUGAUGgacgGGACCUGcGCGCg -3'
miRNA:   3'- uaCAGGGACUGCga--CCUGGGCaUGCG- -5'
5636 3' -57.6 NC_001806.1 + 82971 0.72 0.526745
Target:  5'- uGUGUCCCguaaaguuCGCUGG-CgCGUGCGCc -3'
miRNA:   3'- -UACAGGGacu-----GCGACCuGgGCAUGCG- -5'
5636 3' -57.6 NC_001806.1 + 147760 0.71 0.574214
Target:  5'- -gGUCCCgacgcggccgcgGACGCgggGGGCCCGggGCGg -3'
miRNA:   3'- uaCAGGGa-----------CUGCGa--CCUGGGCa-UGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.