miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5646 3' -62.1 NC_001806.1 + 10921 0.66 0.686628
Target:  5'- aCCCgUCUCCAGGACgUUUUGGgCGu-- -3'
miRNA:   3'- -GGG-GGAGGUCCUGgAGAACCgGCccu -5'
5646 3' -62.1 NC_001806.1 + 57301 0.66 0.677931
Target:  5'- aCCCCCgcgCCAGGGCCcCcacgcacgcgaggugUGGCCGu-- -3'
miRNA:   3'- -GGGGGa--GGUCCUGGaGa--------------ACCGGCccu -5'
5646 3' -62.1 NC_001806.1 + 79245 0.66 0.676963
Target:  5'- aCCCCCggcCCuguGGACCUUguuggGGCgGaGGGc -3'
miRNA:   3'- -GGGGGa--GGu--CCUGGAGaa---CCGgC-CCU- -5'
5646 3' -62.1 NC_001806.1 + 87363 0.66 0.676963
Target:  5'- uCCCCCUCCu---CCUCU-GGCCGc-- -3'
miRNA:   3'- -GGGGGAGGuccuGGAGAaCCGGCccu -5'
5646 3' -62.1 NC_001806.1 + 30845 0.66 0.676963
Target:  5'- gCCCCCgcgcugCUucuGGGCCgCgggGGCCGaGGAa -3'
miRNA:   3'- -GGGGGa-----GGu--CCUGGaGaa-CCGGC-CCU- -5'
5646 3' -62.1 NC_001806.1 + 86761 0.66 0.667265
Target:  5'- gCCgCCUCCGGGAaaUC--GGCCaGGAg -3'
miRNA:   3'- -GGgGGAGGUCCUggAGaaCCGGcCCU- -5'
5646 3' -62.1 NC_001806.1 + 35662 0.66 0.667265
Target:  5'- gCCCCaCCcgacaucacaaGGGACCUCUU-GUCGGGc -3'
miRNA:   3'- gGGGGaGG-----------UCCUGGAGAAcCGGCCCu -5'
5646 3' -62.1 NC_001806.1 + 15850 0.66 0.647797
Target:  5'- gCCCCUUuuGGGGCCgCggggGGCCGaGAa -3'
miRNA:   3'- -GGGGGAggUCCUGGaGaa--CCGGCcCU- -5'
5646 3' -62.1 NC_001806.1 + 132994 0.66 0.638043
Target:  5'- gCUCCCU-CAGaGCC-CUgGGCCGGGGc -3'
miRNA:   3'- -GGGGGAgGUCcUGGaGAaCCGGCCCU- -5'
5646 3' -62.1 NC_001806.1 + 85119 0.66 0.638043
Target:  5'- aCCCUCUCCGGGAugggcuacuaCCUa--GGCauCGGGGg -3'
miRNA:   3'- -GGGGGAGGUCCU----------GGAgaaCCG--GCCCU- -5'
5646 3' -62.1 NC_001806.1 + 106687 0.66 0.628285
Target:  5'- aCCCC-CCGGGGgCUCUUcccgGGCCcccGGGc -3'
miRNA:   3'- gGGGGaGGUCCUgGAGAA----CCGG---CCCu -5'
5646 3' -62.1 NC_001806.1 + 98687 0.66 0.628285
Target:  5'- aCCCCUuuGGGGCg-C-UGGCCGuGGGu -3'
miRNA:   3'- gGGGGAggUCCUGgaGaACCGGC-CCU- -5'
5646 3' -62.1 NC_001806.1 + 1539 0.67 0.618529
Target:  5'- gUCCCUCCGcGGCCcgCgccaccgGGCCGGGc -3'
miRNA:   3'- gGGGGAGGUcCUGGa-Gaa-----CCGGCCCu -5'
5646 3' -62.1 NC_001806.1 + 57017 0.67 0.608782
Target:  5'- gCCCagugCCAGGcACUgggUGGCCGGGc -3'
miRNA:   3'- gGGGga--GGUCC-UGGagaACCGGCCCu -5'
5646 3' -62.1 NC_001806.1 + 28714 0.67 0.599052
Target:  5'- aCCCCCgacUCCGGuGCgUCUggaGGgCGGGAg -3'
miRNA:   3'- -GGGGG---AGGUCcUGgAGAa--CCgGCCCU- -5'
5646 3' -62.1 NC_001806.1 + 100942 0.67 0.599052
Target:  5'- gCCCC-CCAGG-CgUUUugUGGCCaGGGAg -3'
miRNA:   3'- gGGGGaGGUCCuGgAGA--ACCGG-CCCU- -5'
5646 3' -62.1 NC_001806.1 + 29987 0.67 0.579664
Target:  5'- gCCCCUCCGGGGgggUUggGGuuGGGGu -3'
miRNA:   3'- gGGGGAGGUCCUgg-AGaaCCggCCCU- -5'
5646 3' -62.1 NC_001806.1 + 15262 0.67 0.579664
Target:  5'- uCCUCCUCCAGu-CCaauaCUUGGCaUGGGGg -3'
miRNA:   3'- -GGGGGAGGUCcuGGa---GAACCG-GCCCU- -5'
5646 3' -62.1 NC_001806.1 + 55333 0.67 0.570017
Target:  5'- uCCCCCggguggggCggugauguucguCAGGACCUCcucuaGGUCGGGAg -3'
miRNA:   3'- -GGGGGa-------G------------GUCCUGGAGaa---CCGGCCCU- -5'
5646 3' -62.1 NC_001806.1 + 65307 0.67 0.570017
Target:  5'- gCCCCCa--AGGGCCUC--GGUgGGGAc -3'
miRNA:   3'- -GGGGGaggUCCUGGAGaaCCGgCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.