Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5647 | 5' | -61.4 | NC_001806.1 | + | 20092 | 0.68 | 0.561442 |
Target: 5'- -cGUcGUUCgUgGCCGGCGCCgUCUGCg -3' miRNA: 3'- gaCAaCGAGgAgCGGCCGUGG-GGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 22689 | 0.68 | 0.561442 |
Target: 5'- cCUGggGCggcugUCCgccgCGCCcGCcuCCCCCGCg -3' miRNA: 3'- -GACaaCG-----AGGa---GCGGcCGu-GGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 976 | 0.68 | 0.551779 |
Target: 5'- ----cGCcCCUCGCCcccuccCGCCCCCGCc -3' miRNA: 3'- gacaaCGaGGAGCGGcc----GUGGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 78606 | 0.68 | 0.551779 |
Target: 5'- -cGUcGCcgugCCggcCGCCGccacccaccGCACCCCCGCg -3' miRNA: 3'- gaCAaCGa---GGa--GCGGC---------CGUGGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 135622 | 0.68 | 0.551779 |
Target: 5'- gCUGUUGCgcgCCggagcUCGCgGucGCGCUCCUGCa -3' miRNA: 3'- -GACAACGa--GG-----AGCGgC--CGUGGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 102585 | 0.68 | 0.542166 |
Target: 5'- -gGUcGCUa-UCGUCGGCGgCCCCGUg -3' miRNA: 3'- gaCAaCGAggAGCGGCCGUgGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 69253 | 0.68 | 0.542166 |
Target: 5'- ----aGC-CCUcCGCCGGCGCCCagcaGCg -3' miRNA: 3'- gacaaCGaGGA-GCGGCCGUGGGgg--CG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 29764 | 0.68 | 0.542166 |
Target: 5'- ----cGCcCCcCGCCGGaCGCCCCgCGCc -3' miRNA: 3'- gacaaCGaGGaGCGGCC-GUGGGG-GCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 104069 | 0.68 | 0.532609 |
Target: 5'- -cGUUGCUCgcgUUUGCUGGCGgugUCCCCGg -3' miRNA: 3'- gaCAACGAG---GAGCGGCCGU---GGGGGCg -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 102974 | 0.69 | 0.523114 |
Target: 5'- -cGUcGCcCCcaccCGCCGGCucAUCCCCGCg -3' miRNA: 3'- gaCAaCGaGGa---GCGGCCG--UGGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 726 | 0.69 | 0.523114 |
Target: 5'- ----aGC-CCUCcCCGGCGCgUCCCGCg -3' miRNA: 3'- gacaaCGaGGAGcGGCCGUG-GGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 106694 | 0.69 | 0.523114 |
Target: 5'- -gGggGCUCUUC-CCGG-GCCCCCGg -3' miRNA: 3'- gaCaaCGAGGAGcGGCCgUGGGGGCg -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 129646 | 0.69 | 0.504325 |
Target: 5'- ----aGCUCCU-GCaGGCugCCCUGCg -3' miRNA: 3'- gacaaCGAGGAgCGgCCGugGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 104438 | 0.69 | 0.475801 |
Target: 5'- -cGUUGCgcCCUCGCCGGCaacaaaaaGCCacggaagUCCGCc -3' miRNA: 3'- gaCAACGa-GGAGCGGCCG--------UGG-------GGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 72128 | 0.7 | 0.467671 |
Target: 5'- ----cGUUCUUCGCCGGCccgugGgCCCUGCg -3' miRNA: 3'- gacaaCGAGGAGCGGCCG-----UgGGGGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 114339 | 0.7 | 0.467671 |
Target: 5'- -cGcUGCUCugCUCGgCGGCGCCCgaCGCg -3' miRNA: 3'- gaCaACGAG--GAGCgGCCGUGGGg-GCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 78905 | 0.7 | 0.467671 |
Target: 5'- cCUGUccgcGCUCaUCGCCGaGCgGCCCCuCGCc -3' miRNA: 3'- -GACAa---CGAGgAGCGGC-CG-UGGGG-GCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 132447 | 0.7 | 0.458721 |
Target: 5'- -aGUU-CUCCgCGCCGGCGCUCgUCGCc -3' miRNA: 3'- gaCAAcGAGGaGCGGCCGUGGG-GGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 98712 | 0.7 | 0.458721 |
Target: 5'- uCUGUUGgUCCUgGCCGGCcuggcggcgGCCUucuUCGCc -3' miRNA: 3'- -GACAACgAGGAgCGGCCG---------UGGG---GGCG- -5' |
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5647 | 5' | -61.4 | NC_001806.1 | + | 30166 | 0.7 | 0.458721 |
Target: 5'- ----gGCUCCgcccccCGCCccgGGC-CCCCCGCg -3' miRNA: 3'- gacaaCGAGGa-----GCGG---CCGuGGGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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