miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5648 3' -57.5 NC_001806.1 + 41004 0.68 0.720586
Target:  5'- gGGAuguguccauGGC-GCCCGGGUCCUCcGCCCa- -3'
miRNA:   3'- gUCU---------UCGuUGGGUUCGGGAG-CGGGag -5'
5648 3' -57.5 NC_001806.1 + 135980 0.68 0.740318
Target:  5'- -cGAGGCGGCCgAcccGGCCUuggucucgUCGUCCUCc -3'
miRNA:   3'- guCUUCGUUGGgU---UCGGG--------AGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 23431 0.68 0.740318
Target:  5'- ----cGgGGCCCGAGCCCgccccCGCCCa- -3'
miRNA:   3'- gucuuCgUUGGGUUCGGGa----GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 125570 0.68 0.740318
Target:  5'- uGGggGCA-CCCAcGCCCgCGaCCCg- -3'
miRNA:   3'- gUCuuCGUuGGGUuCGGGaGC-GGGag -5'
5648 3' -57.5 NC_001806.1 + 108515 0.68 0.731481
Target:  5'- aAGAAGCAcauccagguACCCGgcGGCCCgcgugcggcuggccgCGCCCg- -3'
miRNA:   3'- gUCUUCGU---------UGGGU--UCGGGa--------------GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 123231 0.68 0.730495
Target:  5'- gAGAuGCcGCCCAcgcGGCCCUgCGCCgaCg -3'
miRNA:   3'- gUCUuCGuUGGGU---UCGGGA-GCGGgaG- -5'
5648 3' -57.5 NC_001806.1 + 112019 0.68 0.730495
Target:  5'- uCAGccuGGCcACCgAGGCCaUCGCCCUg -3'
miRNA:   3'- -GUCu--UCGuUGGgUUCGGgAGCGGGAg -5'
5648 3' -57.5 NC_001806.1 + 125414 0.68 0.729508
Target:  5'- cCAGAcgacaucAGCugugGACCCGAGCUCccauUCGCCCg- -3'
miRNA:   3'- -GUCU-------UCG----UUGGGUUCGGG----AGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 91174 0.68 0.720586
Target:  5'- aCGGccGCGGCCCGcGCCaaCGCCgUCg -3'
miRNA:   3'- -GUCuuCGUUGGGUuCGGgaGCGGgAG- -5'
5648 3' -57.5 NC_001806.1 + 73996 0.68 0.720586
Target:  5'- -cGggGCGGCCCcgcaggGGGCUCcgCGCCCa- -3'
miRNA:   3'- guCuuCGUUGGG------UUCGGGa-GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 76151 0.69 0.63933
Target:  5'- gGGggGCGugCC-GGCCCUgCGCCa-- -3'
miRNA:   3'- gUCuuCGUugGGuUCGGGA-GCGGgag -5'
5648 3' -57.5 NC_001806.1 + 20569 0.69 0.65985
Target:  5'- -cGggGCGcggACCCAcccGCCCUCGCgCCcCg -3'
miRNA:   3'- guCuuCGU---UGGGUu--CGGGAGCG-GGaG- -5'
5648 3' -57.5 NC_001806.1 + 149935 0.69 0.65985
Target:  5'- aGGggGCGGCCCGAGUCU--GCCUg- -3'
miRNA:   3'- gUCuuCGUUGGGUUCGGGagCGGGag -5'
5648 3' -57.5 NC_001806.1 + 116836 0.69 0.663945
Target:  5'- gGGAGGCcGCCCAgcucauucaccccgaAGCCC-CGgCCCUg -3'
miRNA:   3'- gUCUUCGuUGGGU---------------UCGGGaGC-GGGAg -5'
5648 3' -57.5 NC_001806.1 + 46673 0.69 0.680278
Target:  5'- --cGAGCGACCuCGAGCCC-CaGCCCg- -3'
miRNA:   3'- gucUUCGUUGG-GUUCGGGaG-CGGGag -5'
5648 3' -57.5 NC_001806.1 + 22048 0.7 0.618788
Target:  5'- gGGGAGCcguGGCCCGgcgccgGGCCCcCGCCCcCg -3'
miRNA:   3'- gUCUUCG---UUGGGU------UCGGGaGCGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 23803 0.7 0.608528
Target:  5'- cCGGggGCcGCCUcuuuGGCCCccugCGCgCCUCg -3'
miRNA:   3'- -GUCuuCGuUGGGu---UCGGGa---GCG-GGAG- -5'
5648 3' -57.5 NC_001806.1 + 49124 0.7 0.608528
Target:  5'- aGGAGGCGcgcauccacccGCCCccGCgCCUCGCCCg- -3'
miRNA:   3'- gUCUUCGU-----------UGGGuuCG-GGAGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 5771 0.7 0.588069
Target:  5'- aGGggGCGggGCCCGGGCCC-CGaCUUCc -3'
miRNA:   3'- gUCuuCGU--UGGGUUCGGGaGCgGGAG- -5'
5648 3' -57.5 NC_001806.1 + 73890 0.7 0.564704
Target:  5'- uGGAGGCGgaggaucgccagauGCgCgAGGCCCUCgacGCCCUCg -3'
miRNA:   3'- gUCUUCGU--------------UG-GgUUCGGGAG---CGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.