Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 83766 | 0.67 | 0.78782 |
Target: 5'- gCAGucuGCcACCCGGGCCCUCaucggaaccuuGgCCUCc -3' miRNA: 3'- -GUCuu-CGuUGGGUUCGGGAG-----------CgGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 109043 | 0.67 | 0.778566 |
Target: 5'- uGGAGGgGGCUCAGGCCCaacgCgGCCC-Cg -3' miRNA: 3'- gUCUUCgUUGGGUUCGGGa---G-CGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 1613 | 0.67 | 0.778566 |
Target: 5'- gCAGcGGCGcGCCCAGGCCCcagCGCgCg- -3' miRNA: 3'- -GUCuUCGU-UGGGUUCGGGa--GCGgGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 83575 | 0.68 | 0.700548 |
Target: 5'- aAGAAgGCGACCCuggucGGCuCCUucgcacgcuuUGCCCUCa -3' miRNA: 3'- gUCUU-CGUUGGGu----UCG-GGA----------GCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 76353 | 0.68 | 0.690438 |
Target: 5'- gCAGggGUcACCCu-GCCCU-GCCCg- -3' miRNA: 3'- -GUCuuCGuUGGGuuCGGGAgCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 150092 | 0.68 | 0.690438 |
Target: 5'- gGGAGGCAgGCCCAccgcggggcGGCCC-CGUCCcCg -3' miRNA: 3'- gUCUUCGU-UGGGU---------UCGGGaGCGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 49360 | 0.68 | 0.740318 |
Target: 5'- cCGGcAGCGcCCCGGGCCCgaugCGgCCCg- -3' miRNA: 3'- -GUCuUCGUuGGGUUCGGGa---GC-GGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 26417 | 0.68 | 0.740318 |
Target: 5'- ---cGGCcGCCCGGGCCCacgggCGCCgUCc -3' miRNA: 3'- gucuUCGuUGGGUUCGGGa----GCGGgAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 16874 | 0.68 | 0.740318 |
Target: 5'- cCGGggGCGGggagUCCAGGCacgCGUCCUCg -3' miRNA: 3'- -GUCuuCGUU----GGGUUCGggaGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 96492 | 0.68 | 0.69954 |
Target: 5'- gCGGccGCGACCCAggcggcgaacgggGGCCCU-GCCaCUCc -3' miRNA: 3'- -GUCuuCGUUGGGU-------------UCGGGAgCGG-GAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 88998 | 0.68 | 0.689424 |
Target: 5'- cCAGAAGCcGCCCGA-CCCgacgcggaggacgUCGCgCUCg -3' miRNA: 3'- -GUCUUCGuUGGGUUcGGG-------------AGCGgGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 115308 | 0.68 | 0.690438 |
Target: 5'- cCAG-AGCGACCCGucccgGGCCUUCGCggCCa- -3' miRNA: 3'- -GUCuUCGUUGGGU-----UCGGGAGCG--GGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 69898 | 0.68 | 0.690438 |
Target: 5'- -cGcGGCGACCCAGauccgcuuCCC-CGCCCUCg -3' miRNA: 3'- guCuUCGUUGGGUUc-------GGGaGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 21654 | 0.68 | 0.730495 |
Target: 5'- ----cGUcgGACuCCGGGUCCUCGUCCUCg -3' miRNA: 3'- gucuuCG--UUG-GGUUCGGGAGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 112019 | 0.68 | 0.730495 |
Target: 5'- uCAGccuGGCcACCgAGGCCaUCGCCCUg -3' miRNA: 3'- -GUCu--UCGuUGGgUUCGGgAGCGGGAg -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 123231 | 0.68 | 0.730495 |
Target: 5'- gAGAuGCcGCCCAcgcGGCCCUgCGCCgaCg -3' miRNA: 3'- gUCUuCGuUGGGU---UCGGGA-GCGGgaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 108515 | 0.68 | 0.731481 |
Target: 5'- aAGAAGCAcauccagguACCCGgcGGCCCgcgugcggcuggccgCGCCCg- -3' miRNA: 3'- gUCUUCGU---------UGGGU--UCGGGa--------------GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 125570 | 0.68 | 0.740318 |
Target: 5'- uGGggGCA-CCCAcGCCCgCGaCCCg- -3' miRNA: 3'- gUCuuCGUuGGGUuCGGGaGC-GGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 23431 | 0.68 | 0.740318 |
Target: 5'- ----cGgGGCCCGAGCCCgccccCGCCCa- -3' miRNA: 3'- gucuuCgUUGGGUUCGGGa----GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 2312 | 0.68 | 0.690438 |
Target: 5'- -cGAGGCcccgccgccGgCCAGGUCCUCGCCCg- -3' miRNA: 3'- guCUUCGu--------UgGGUUCGGGAGCGGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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