miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5648 3' -57.5 NC_001806.1 + 112019 0.68 0.730495
Target:  5'- uCAGccuGGCcACCgAGGCCaUCGCCCUg -3'
miRNA:   3'- -GUCu--UCGuUGGgUUCGGgAGCGGGAg -5'
5648 3' -57.5 NC_001806.1 + 21654 0.68 0.730495
Target:  5'- ----cGUcgGACuCCGGGUCCUCGUCCUCg -3'
miRNA:   3'- gucuuCG--UUG-GGUUCGGGAGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 10890 0.68 0.730495
Target:  5'- uGGAAGCAACgaAAcGUCCUCGCCgacaCUCa -3'
miRNA:   3'- gUCUUCGUUGggUU-CGGGAGCGG----GAG- -5'
5648 3' -57.5 NC_001806.1 + 108515 0.68 0.731481
Target:  5'- aAGAAGCAcauccagguACCCGgcGGCCCgcgugcggcuggccgCGCCCg- -3'
miRNA:   3'- gUCUUCGU---------UGGGU--UCGGGa--------------GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 49360 0.68 0.740318
Target:  5'- cCGGcAGCGcCCCGGGCCCgaugCGgCCCg- -3'
miRNA:   3'- -GUCuUCGUuGGGUUCGGGa---GC-GGGag -5'
5648 3' -57.5 NC_001806.1 + 26417 0.68 0.740318
Target:  5'- ---cGGCcGCCCGGGCCCacgggCGCCgUCc -3'
miRNA:   3'- gucuUCGuUGGGUUCGGGa----GCGGgAG- -5'
5648 3' -57.5 NC_001806.1 + 16874 0.68 0.740318
Target:  5'- cCGGggGCGGggagUCCAGGCacgCGUCCUCg -3'
miRNA:   3'- -GUCuuCGUU----GGGUUCGggaGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 135980 0.68 0.740318
Target:  5'- -cGAGGCGGCCgAcccGGCCUuggucucgUCGUCCUCc -3'
miRNA:   3'- guCUUCGUUGGgU---UCGGG--------AGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 23431 0.68 0.740318
Target:  5'- ----cGgGGCCCGAGCCCgccccCGCCCa- -3'
miRNA:   3'- gucuuCgUUGGGUUCGGGa----GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 125570 0.68 0.740318
Target:  5'- uGGggGCA-CCCAcGCCCgCGaCCCg- -3'
miRNA:   3'- gUCuuCGUuGGGUuCGGGaGC-GGGag -5'
5648 3' -57.5 NC_001806.1 + 57948 0.67 0.750046
Target:  5'- uCGGAcaGGCAugCaAGGCCCcCGCCuCUCc -3'
miRNA:   3'- -GUCU--UCGUugGgUUCGGGaGCGG-GAG- -5'
5648 3' -57.5 NC_001806.1 + 106692 0.67 0.759669
Target:  5'- cCGGggGCucuuCCCGGGCCCccgggCgGCCCcCg -3'
miRNA:   3'- -GUCuuCGuu--GGGUUCGGGa----G-CGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 134995 0.67 0.759669
Target:  5'- ----cGguGCCCGAuGCCCcCGCCCUg -3'
miRNA:   3'- gucuuCguUGGGUU-CGGGaGCGGGAg -5'
5648 3' -57.5 NC_001806.1 + 33143 0.67 0.759669
Target:  5'- uCGGggGCcccucguCCCGggccguacgcGGCCUUCGCCC-Cg -3'
miRNA:   3'- -GUCuuCGuu-----GGGU----------UCGGGAGCGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 30643 0.67 0.759669
Target:  5'- gGGggGCGcggccaggguggGCCCGGGaCCCcccugaCGUCCUCg -3'
miRNA:   3'- gUCuuCGU------------UGGGUUC-GGGa-----GCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 55806 0.67 0.759669
Target:  5'- uGGAGGCAGuuUCCGAGCCCccggacaccccCGCCC-Cg -3'
miRNA:   3'- gUCUUCGUU--GGGUUCGGGa----------GCGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 149802 0.67 0.759669
Target:  5'- uGGggGCGGCCCucAGGCCggcggguaCUCGCUC-Cg -3'
miRNA:   3'- gUCuuCGUUGGG--UUCGG--------GAGCGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 23552 0.67 0.765389
Target:  5'- gCGGcGGCAGCCCccgGGGCCCagccacacggcggCGCCCg- -3'
miRNA:   3'- -GUCuUCGUUGGG---UUCGGGa------------GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 18075 0.67 0.769179
Target:  5'- cCAGAcgAGCAACCCAcaucgccgGGCCgUgGUCCg- -3'
miRNA:   3'- -GUCU--UCGUUGGGU--------UCGGgAgCGGGag -5'
5648 3' -57.5 NC_001806.1 + 57594 0.67 0.769179
Target:  5'- gAGAguugGGCGGCCgccaAGGCCC-CGCCCcgUCa -3'
miRNA:   3'- gUCU----UCGUUGGg---UUCGGGaGCGGG--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.