Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 55806 | 0.67 | 0.759669 |
Target: 5'- uGGAGGCAGuuUCCGAGCCCccggacaccccCGCCC-Cg -3' miRNA: 3'- gUCUUCGUU--GGGUUCGGGa----------GCGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 56516 | 0.67 | 0.78782 |
Target: 5'- aCAGcGGCAgGCCCGGGCCCggCGUUCc- -3' miRNA: 3'- -GUCuUCGU-UGGGUUCGGGa-GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 57594 | 0.67 | 0.769179 |
Target: 5'- gAGAguugGGCGGCCgccaAGGCCC-CGCCCcgUCa -3' miRNA: 3'- gUCU----UCGUUGGg---UUCGGGaGCGGG--AG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 57948 | 0.67 | 0.750046 |
Target: 5'- uCGGAcaGGCAugCaAGGCCCcCGCCuCUCc -3' miRNA: 3'- -GUCU--UCGUugGgUUCGGGaGCGG-GAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 60604 | 0.76 | 0.277152 |
Target: 5'- cCGGggGCcACCCcGGCCCcaggUCGUCCUCc -3' miRNA: 3'- -GUCuuCGuUGGGuUCGGG----AGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 60964 | 0.66 | 0.814703 |
Target: 5'- gCAGuuGCgGACCCAGGCCC-C-CCCa- -3' miRNA: 3'- -GUCuuCG-UUGGGUUCGGGaGcGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 62018 | 0.72 | 0.469734 |
Target: 5'- aGGAAGCggUaaAAGCUgagCUCGCCCUCg -3' miRNA: 3'- gUCUUCGuuGggUUCGG---GAGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 65444 | 0.66 | 0.812078 |
Target: 5'- aGGGAGCGGgggaugccgcggccCCCGGGUCCUgggggCGCCCg- -3' miRNA: 3'- gUCUUCGUU--------------GGGUUCGGGA-----GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 66738 | 0.66 | 0.805897 |
Target: 5'- aCAGAAacGCcgcGCCCGGGCCCcccaGCCC-Ca -3' miRNA: 3'- -GUCUU--CGu--UGGGUUCGGGag--CGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 67172 | 0.66 | 0.796934 |
Target: 5'- cCAucAGCuGGCCCcAGgCCUCGCCCa- -3' miRNA: 3'- -GUcuUCG-UUGGGuUCgGGAGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 69246 | 0.74 | 0.37287 |
Target: 5'- gGGGAGCAGCCCuccGCCggCGCCCa- -3' miRNA: 3'- gUCUUCGUUGGGuu-CGGgaGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 69898 | 0.68 | 0.690438 |
Target: 5'- -cGcGGCGACCCAGauccgcuuCCC-CGCCCUCg -3' miRNA: 3'- guCuUCGUUGGGUUc-------GGGaGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 72591 | 0.66 | 0.813829 |
Target: 5'- cCAGucGCcgccaccGACCCGGGCCCgUCGCgacgacagggCCUCc -3' miRNA: 3'- -GUCuuCG-------UUGGGUUCGGG-AGCG----------GGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 73200 | 0.66 | 0.822484 |
Target: 5'- -cGccGCucGCCCGAGCCCccgggcgcagaccUCGCCCa- -3' miRNA: 3'- guCuuCGu-UGGGUUCGGG-------------AGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 73442 | 0.66 | 0.796029 |
Target: 5'- cCGGAcGCAcACCCAggccgggguggccGGCCCggccgcCGCCCUg -3' miRNA: 3'- -GUCUuCGU-UGGGU-------------UCGGGa-----GCGGGAg -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 73890 | 0.7 | 0.564704 |
Target: 5'- uGGAGGCGgaggaucgccagauGCgCgAGGCCCUCgacGCCCUCg -3' miRNA: 3'- gUCUUCGU--------------UG-GgUUCGGGAG---CGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 73996 | 0.68 | 0.720586 |
Target: 5'- -cGggGCGGCCCcgcaggGGGCUCcgCGCCCa- -3' miRNA: 3'- guCuuCGUUGGG------UUCGGGa-GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 75860 | 0.66 | 0.796029 |
Target: 5'- gGGAAcCAACgCCAAGgcggugaCCCUUGCCCUg -3' miRNA: 3'- gUCUUcGUUG-GGUUC-------GGGAGCGGGAg -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 76151 | 0.69 | 0.63933 |
Target: 5'- gGGggGCGugCC-GGCCCUgCGCCa-- -3' miRNA: 3'- gUCuuCGUugGGuUCGGGA-GCGGgag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 76353 | 0.68 | 0.690438 |
Target: 5'- gCAGggGUcACCCu-GCCCU-GCCCg- -3' miRNA: 3'- -GUCuuCGuUGGGuuCGGGAgCGGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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