miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5648 3' -57.5 NC_001806.1 + 23431 0.68 0.740318
Target:  5'- ----cGgGGCCCGAGCCCgccccCGCCCa- -3'
miRNA:   3'- gucuuCgUUGGGUUCGGGa----GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 23474 0.66 0.831803
Target:  5'- -cGccGCGGCgCAGGCCCgcccgCGCCC-Cg -3'
miRNA:   3'- guCuuCGUUGgGUUCGGGa----GCGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 23552 0.67 0.765389
Target:  5'- gCGGcGGCAGCCCccgGGGCCCagccacacggcggCGCCCg- -3'
miRNA:   3'- -GUCuUCGUUGGG---UUCGGGa------------GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 23803 0.7 0.608528
Target:  5'- cCGGggGCcGCCUcuuuGGCCCccugCGCgCCUCg -3'
miRNA:   3'- -GUCuuCGuUGGGu---UCGGGa---GCG-GGAG- -5'
5648 3' -57.5 NC_001806.1 + 26256 0.71 0.557639
Target:  5'- gCGGcGGGCAGCCCGGGCCCcccgCGgCCg- -3'
miRNA:   3'- -GUC-UUCGUUGGGUUCGGGa---GCgGGag -5'
5648 3' -57.5 NC_001806.1 + 26417 0.68 0.740318
Target:  5'- ---cGGCcGCCCGGGCCCacgggCGCCgUCc -3'
miRNA:   3'- gucuUCGuUGGGUUCGGGa----GCGGgAG- -5'
5648 3' -57.5 NC_001806.1 + 26651 0.66 0.835137
Target:  5'- cCAGAGGCccGGCCCAccgccgccgccccccGGCCC-CgGCCCcCa -3'
miRNA:   3'- -GUCUUCG--UUGGGU---------------UCGGGaG-CGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 27069 0.78 0.20717
Target:  5'- -cGAGGCccguGCCCGGGCCCUgGCCCg- -3'
miRNA:   3'- guCUUCGu---UGGGUUCGGGAgCGGGag -5'
5648 3' -57.5 NC_001806.1 + 27202 0.66 0.813829
Target:  5'- gCAGGAGCcGCgCAuauauacgcuuggAGCCagccCGCCCUCa -3'
miRNA:   3'- -GUCUUCGuUGgGU-------------UCGGga--GCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 30643 0.67 0.759669
Target:  5'- gGGggGCGcggccaggguggGCCCGGGaCCCcccugaCGUCCUCg -3'
miRNA:   3'- gUCuuCGU------------UGGGUUC-GGGa-----GCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 33143 0.67 0.759669
Target:  5'- uCGGggGCcccucguCCCGggccguacgcGGCCUUCGCCC-Cg -3'
miRNA:   3'- -GUCuuCGuu-----GGGU----------UCGGGAGCGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 41004 0.68 0.720586
Target:  5'- gGGAuguguccauGGC-GCCCGGGUCCUCcGCCCa- -3'
miRNA:   3'- gUCU---------UCGuUGGGUUCGGGAG-CGGGag -5'
5648 3' -57.5 NC_001806.1 + 41193 0.67 0.78782
Target:  5'- aCAGGAgcugaaccGCAGCCaGAGCCCcgCGCCUa- -3'
miRNA:   3'- -GUCUU--------CGUUGGgUUCGGGa-GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 43869 0.68 0.710601
Target:  5'- cCAGAccuacAGCcucCCCAAccGCaCCUCGCCCUg -3'
miRNA:   3'- -GUCU-----UCGuu-GGGUU--CG-GGAGCGGGAg -5'
5648 3' -57.5 NC_001806.1 + 46673 0.69 0.680278
Target:  5'- --cGAGCGACCuCGAGCCC-CaGCCCg- -3'
miRNA:   3'- gucUUCGUUGG-GUUCGGGaG-CGGGag -5'
5648 3' -57.5 NC_001806.1 + 47254 0.67 0.78782
Target:  5'- -cGggGCGccugAgCCAGGCCCagcucaUGCCCUCc -3'
miRNA:   3'- guCuuCGU----UgGGUUCGGGa-----GCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 49124 0.7 0.608528
Target:  5'- aGGAGGCGcgcauccacccGCCCccGCgCCUCGCCCg- -3'
miRNA:   3'- gUCUUCGU-----------UGGGuuCG-GGAGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 49360 0.68 0.740318
Target:  5'- cCGGcAGCGcCCCGGGCCCgaugCGgCCCg- -3'
miRNA:   3'- -GUCuUCGUuGGGUUCGGGa---GC-GGGag -5'
5648 3' -57.5 NC_001806.1 + 49639 0.66 0.840083
Target:  5'- gGGAcGCGugCCGGGCCCggaGCUC-Cg -3'
miRNA:   3'- gUCUuCGUugGGUUCGGGag-CGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 52637 0.66 0.814703
Target:  5'- gCGGgcGCGGCgcgacaaCGAGCCCcCGcCCCUCc -3'
miRNA:   3'- -GUCuuCGUUGg------GUUCGGGaGC-GGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.