Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 612 | 0.66 | 0.796934 |
Target: 5'- cCAGcccucccCAGCCCcAGCCCUCcccggccccaGCCCUCc -3' miRNA: 3'- -GUCuuc----GUUGGGuUCGGGAG----------CGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 816 | 0.66 | 0.82334 |
Target: 5'- cCGGggGC-GCCCGcGCaccaccaccgccCCUCGCCCc- -3' miRNA: 3'- -GUCuuCGuUGGGUuCG------------GGAGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 1337 | 0.71 | 0.557639 |
Target: 5'- gCGGggGCGuggCCAAGCCCgccucCGCCCcCa -3' miRNA: 3'- -GUCuuCGUug-GGUUCGGGa----GCGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 1448 | 0.68 | 0.700548 |
Target: 5'- cCGGcGGCAGggccCCCGGGCCgUCGUCgUCg -3' miRNA: 3'- -GUCuUCGUU----GGGUUCGGgAGCGGgAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 1613 | 0.67 | 0.778566 |
Target: 5'- gCAGcGGCGcGCCCAGGCCCcagCGCgCg- -3' miRNA: 3'- -GUCuUCGU-UGGGUUCGGGa--GCGgGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 2312 | 0.68 | 0.690438 |
Target: 5'- -cGAGGCcccgccgccGgCCAGGUCCUCGCCCg- -3' miRNA: 3'- guCUUCGu--------UgGGUUCGGGAGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 4358 | 0.66 | 0.822484 |
Target: 5'- -cGAuGCGGCCCGcggaggccgcgggGGUCCUCGCCg-- -3' miRNA: 3'- guCUuCGUUGGGU-------------UCGGGAGCGGgag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 5503 | 0.66 | 0.805897 |
Target: 5'- gAGGAGCAGCggaggCCGccGGCCCccCGCCCc- -3' miRNA: 3'- gUCUUCGUUG-----GGU--UCGGGa-GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 5608 | 0.68 | 0.707591 |
Target: 5'- uGGccGCGGCCCGuuggucgaacccccGGCCC-CGCCCa- -3' miRNA: 3'- gUCuuCGUUGGGU--------------UCGGGaGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 5771 | 0.7 | 0.588069 |
Target: 5'- aGGggGCGggGCCCGGGCCC-CGaCUUCc -3' miRNA: 3'- gUCuuCGU--UGGGUUCGGGaGCgGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 5890 | 0.67 | 0.769179 |
Target: 5'- aCGGcGGGCGGCCCAagGGCCgCcCGCCUUg -3' miRNA: 3'- -GUC-UUCGUUGGGU--UCGG-GaGCGGGAg -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 10429 | 0.74 | 0.37287 |
Target: 5'- gCGGGAGUgccggcgaGACUUucGUCCUCGCCCUCg -3' miRNA: 3'- -GUCUUCG--------UUGGGuuCGGGAGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 10890 | 0.68 | 0.730495 |
Target: 5'- uGGAAGCAACgaAAcGUCCUCGCCgacaCUCa -3' miRNA: 3'- gUCUUCGUUGggUU-CGGGAGCGG----GAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 16874 | 0.68 | 0.740318 |
Target: 5'- cCGGggGCGGggagUCCAGGCacgCGUCCUCg -3' miRNA: 3'- -GUCuuCGUU----GGGUUCGggaGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 18075 | 0.67 | 0.769179 |
Target: 5'- cCAGAcgAGCAACCCAcaucgccgGGCCgUgGUCCg- -3' miRNA: 3'- -GUCU--UCGUUGGGU--------UCGGgAgCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 20467 | 0.77 | 0.264296 |
Target: 5'- gGGAAGUcggGGCCCGGGCCC-CGCCCc- -3' miRNA: 3'- gUCUUCG---UUGGGUUCGGGaGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 20569 | 0.69 | 0.65985 |
Target: 5'- -cGggGCGcggACCCAcccGCCCUCGCgCCcCg -3' miRNA: 3'- guCuuCGU---UGGGUu--CGGGAGCG-GGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 21654 | 0.68 | 0.730495 |
Target: 5'- ----cGUcgGACuCCGGGUCCUCGUCCUCg -3' miRNA: 3'- gucuuCG--UUG-GGUUCGGGAGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 22048 | 0.7 | 0.618788 |
Target: 5'- gGGGAGCcguGGCCCGgcgccgGGCCCcCGCCCcCg -3' miRNA: 3'- gUCUUCG---UUGGGU------UCGGGaGCGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 22883 | 0.66 | 0.840083 |
Target: 5'- -cGggGCuGGCCgGGGCCCg-GCCCg- -3' miRNA: 3'- guCuuCG-UUGGgUUCGGGagCGGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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