miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5648 3' -57.5 NC_001806.1 + 612 0.66 0.796934
Target:  5'- cCAGcccucccCAGCCCcAGCCCUCcccggccccaGCCCUCc -3'
miRNA:   3'- -GUCuuc----GUUGGGuUCGGGAG----------CGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 816 0.66 0.82334
Target:  5'- cCGGggGC-GCCCGcGCaccaccaccgccCCUCGCCCc- -3'
miRNA:   3'- -GUCuuCGuUGGGUuCG------------GGAGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 1337 0.71 0.557639
Target:  5'- gCGGggGCGuggCCAAGCCCgccucCGCCCcCa -3'
miRNA:   3'- -GUCuuCGUug-GGUUCGGGa----GCGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 1448 0.68 0.700548
Target:  5'- cCGGcGGCAGggccCCCGGGCCgUCGUCgUCg -3'
miRNA:   3'- -GUCuUCGUU----GGGUUCGGgAGCGGgAG- -5'
5648 3' -57.5 NC_001806.1 + 1613 0.67 0.778566
Target:  5'- gCAGcGGCGcGCCCAGGCCCcagCGCgCg- -3'
miRNA:   3'- -GUCuUCGU-UGGGUUCGGGa--GCGgGag -5'
5648 3' -57.5 NC_001806.1 + 2312 0.68 0.690438
Target:  5'- -cGAGGCcccgccgccGgCCAGGUCCUCGCCCg- -3'
miRNA:   3'- guCUUCGu--------UgGGUUCGGGAGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 4358 0.66 0.822484
Target:  5'- -cGAuGCGGCCCGcggaggccgcgggGGUCCUCGCCg-- -3'
miRNA:   3'- guCUuCGUUGGGU-------------UCGGGAGCGGgag -5'
5648 3' -57.5 NC_001806.1 + 5503 0.66 0.805897
Target:  5'- gAGGAGCAGCggaggCCGccGGCCCccCGCCCc- -3'
miRNA:   3'- gUCUUCGUUG-----GGU--UCGGGa-GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 5608 0.68 0.707591
Target:  5'- uGGccGCGGCCCGuuggucgaacccccGGCCC-CGCCCa- -3'
miRNA:   3'- gUCuuCGUUGGGU--------------UCGGGaGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 5771 0.7 0.588069
Target:  5'- aGGggGCGggGCCCGGGCCC-CGaCUUCc -3'
miRNA:   3'- gUCuuCGU--UGGGUUCGGGaGCgGGAG- -5'
5648 3' -57.5 NC_001806.1 + 5890 0.67 0.769179
Target:  5'- aCGGcGGGCGGCCCAagGGCCgCcCGCCUUg -3'
miRNA:   3'- -GUC-UUCGUUGGGU--UCGG-GaGCGGGAg -5'
5648 3' -57.5 NC_001806.1 + 10429 0.74 0.37287
Target:  5'- gCGGGAGUgccggcgaGACUUucGUCCUCGCCCUCg -3'
miRNA:   3'- -GUCUUCG--------UUGGGuuCGGGAGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 10890 0.68 0.730495
Target:  5'- uGGAAGCAACgaAAcGUCCUCGCCgacaCUCa -3'
miRNA:   3'- gUCUUCGUUGggUU-CGGGAGCGG----GAG- -5'
5648 3' -57.5 NC_001806.1 + 16874 0.68 0.740318
Target:  5'- cCGGggGCGGggagUCCAGGCacgCGUCCUCg -3'
miRNA:   3'- -GUCuuCGUU----GGGUUCGggaGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 18075 0.67 0.769179
Target:  5'- cCAGAcgAGCAACCCAcaucgccgGGCCgUgGUCCg- -3'
miRNA:   3'- -GUCU--UCGUUGGGU--------UCGGgAgCGGGag -5'
5648 3' -57.5 NC_001806.1 + 20467 0.77 0.264296
Target:  5'- gGGAAGUcggGGCCCGGGCCC-CGCCCc- -3'
miRNA:   3'- gUCUUCG---UUGGGUUCGGGaGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 20569 0.69 0.65985
Target:  5'- -cGggGCGcggACCCAcccGCCCUCGCgCCcCg -3'
miRNA:   3'- guCuuCGU---UGGGUu--CGGGAGCG-GGaG- -5'
5648 3' -57.5 NC_001806.1 + 21654 0.68 0.730495
Target:  5'- ----cGUcgGACuCCGGGUCCUCGUCCUCg -3'
miRNA:   3'- gucuuCG--UUG-GGUUCGGGAGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 22048 0.7 0.618788
Target:  5'- gGGGAGCcguGGCCCGgcgccgGGCCCcCGCCCcCg -3'
miRNA:   3'- gUCUUCG---UUGGGU------UCGGGaGCGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 22883 0.66 0.840083
Target:  5'- -cGggGCuGGCCgGGGCCCg-GCCCg- -3'
miRNA:   3'- guCuuCG-UUGGgUUCGGGagCGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.