Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 104795 | 0.72 | 0.488707 |
Target: 5'- uGGGAGCucacauGCCCcgcccccGGCCCUCaCCCUCa -3' miRNA: 3'- gUCUUCGu-----UGGGu------UCGGGAGcGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 49639 | 0.66 | 0.840083 |
Target: 5'- gGGAcGCGugCCGGGCCCggaGCUC-Cg -3' miRNA: 3'- gUCUuCGUugGGUUCGGGag-CGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 20569 | 0.69 | 0.65985 |
Target: 5'- -cGggGCGcggACCCAcccGCCCUCGCgCCcCg -3' miRNA: 3'- guCuuCGU---UGGGUu--CGGGAGCG-GGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 76151 | 0.69 | 0.63933 |
Target: 5'- gGGggGCGugCC-GGCCCUgCGCCa-- -3' miRNA: 3'- gUCuuCGUugGGuUCGGGA-GCGGgag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 22048 | 0.7 | 0.618788 |
Target: 5'- gGGGAGCcguGGCCCGgcgccgGGCCCcCGCCCcCg -3' miRNA: 3'- gUCUUCG---UUGGGU------UCGGGaGCGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 23803 | 0.7 | 0.608528 |
Target: 5'- cCGGggGCcGCCUcuuuGGCCCccugCGCgCCUCg -3' miRNA: 3'- -GUCuuCGuUGGGu---UCGGGa---GCG-GGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 49124 | 0.7 | 0.608528 |
Target: 5'- aGGAGGCGcgcauccacccGCCCccGCgCCUCGCCCg- -3' miRNA: 3'- gUCUUCGU-----------UGGGuuCG-GGAGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 5771 | 0.7 | 0.588069 |
Target: 5'- aGGggGCGggGCCCGGGCCC-CGaCUUCc -3' miRNA: 3'- gUCuuCGU--UGGGUUCGGGaGCgGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 73890 | 0.7 | 0.564704 |
Target: 5'- uGGAGGCGgaggaucgccagauGCgCgAGGCCCUCgacGCCCUCg -3' miRNA: 3'- gUCUUCGU--------------UG-GgUUCGGGAG---CGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 1337 | 0.71 | 0.557639 |
Target: 5'- gCGGggGCGuggCCAAGCCCgccucCGCCCcCa -3' miRNA: 3'- -GUCuuCGUug-GGUUCGGGa----GCGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 26256 | 0.71 | 0.557639 |
Target: 5'- gCGGcGGGCAGCCCGGGCCCcccgCGgCCg- -3' miRNA: 3'- -GUC-UUCGUUGGGUUCGGGa---GCgGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 83694 | 1.08 | 0.002012 |
Target: 5'- cCAGAAGCAACCCAAGCCCUCGCCCUCc -3' miRNA: 3'- -GUCUUCGUUGGGUUCGGGAGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 62018 | 0.72 | 0.469734 |
Target: 5'- aGGAAGCggUaaAAGCUgagCUCGCCCUCg -3' miRNA: 3'- gUCUUCGuuGggUUCGG---GAGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 77867 | 0.72 | 0.460389 |
Target: 5'- uGGAuGCGGCggCCGAGCUCuacgUCGCCCUCg -3' miRNA: 3'- gUCUuCGUUG--GGUUCGGG----AGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 10429 | 0.74 | 0.37287 |
Target: 5'- gCGGGAGUgccggcgaGACUUucGUCCUCGCCCUCg -3' miRNA: 3'- -GUCUUCG--------UUGGGuuCGGGAGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 69246 | 0.74 | 0.37287 |
Target: 5'- gGGGAGCAGCCCuccGCCggCGCCCa- -3' miRNA: 3'- gUCUUCGUUGGGuu-CGGgaGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 117686 | 0.74 | 0.356772 |
Target: 5'- gAGAAGCucggGGCCCGAGCCCgcgUCGgccCCCUCc -3' miRNA: 3'- gUCUUCG----UUGGGUUCGGG---AGC---GGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 138686 | 0.75 | 0.318702 |
Target: 5'- uGGAuGCGACCCAgaGGaCCCUCGCCUa- -3' miRNA: 3'- gUCUuCGUUGGGU--UC-GGGAGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 60604 | 0.76 | 0.277152 |
Target: 5'- cCGGggGCcACCCcGGCCCcaggUCGUCCUCc -3' miRNA: 3'- -GUCuuCGuUGGGuUCGGG----AGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 20467 | 0.77 | 0.264296 |
Target: 5'- gGGAAGUcggGGCCCGGGCCC-CGCCCc- -3' miRNA: 3'- gUCUUCG---UUGGGUUCGGGaGCGGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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