miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5648 3' -57.5 NC_001806.1 + 49639 0.66 0.840083
Target:  5'- gGGAcGCGugCCGGGCCCggaGCUC-Cg -3'
miRNA:   3'- gUCUuCGUugGGUUCGGGag-CGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 1337 0.71 0.557639
Target:  5'- gCGGggGCGuggCCAAGCCCgccucCGCCCcCa -3'
miRNA:   3'- -GUCuuCGUug-GGUUCGGGa----GCGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 73890 0.7 0.564704
Target:  5'- uGGAGGCGgaggaucgccagauGCgCgAGGCCCUCgacGCCCUCg -3'
miRNA:   3'- gUCUUCGU--------------UG-GgUUCGGGAG---CGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 5771 0.7 0.588069
Target:  5'- aGGggGCGggGCCCGGGCCC-CGaCUUCc -3'
miRNA:   3'- gUCuuCGU--UGGGUUCGGGaGCgGGAG- -5'
5648 3' -57.5 NC_001806.1 + 49124 0.7 0.608528
Target:  5'- aGGAGGCGcgcauccacccGCCCccGCgCCUCGCCCg- -3'
miRNA:   3'- gUCUUCGU-----------UGGGuuCG-GGAGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 23803 0.7 0.608528
Target:  5'- cCGGggGCcGCCUcuuuGGCCCccugCGCgCCUCg -3'
miRNA:   3'- -GUCuuCGuUGGGu---UCGGGa---GCG-GGAG- -5'
5648 3' -57.5 NC_001806.1 + 22048 0.7 0.618788
Target:  5'- gGGGAGCcguGGCCCGgcgccgGGCCCcCGCCCcCg -3'
miRNA:   3'- gUCUUCG---UUGGGU------UCGGGaGCGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 76151 0.69 0.63933
Target:  5'- gGGggGCGugCC-GGCCCUgCGCCa-- -3'
miRNA:   3'- gUCuuCGUugGGuUCGGGA-GCGGgag -5'
5648 3' -57.5 NC_001806.1 + 20569 0.69 0.65985
Target:  5'- -cGggGCGcggACCCAcccGCCCUCGCgCCcCg -3'
miRNA:   3'- guCuuCGU---UGGGUu--CGGGAGCG-GGaG- -5'
5648 3' -57.5 NC_001806.1 + 26256 0.71 0.557639
Target:  5'- gCGGcGGGCAGCCCGGGCCCcccgCGgCCg- -3'
miRNA:   3'- -GUC-UUCGUUGGGUUCGGGa---GCgGGag -5'
5648 3' -57.5 NC_001806.1 + 104795 0.72 0.488707
Target:  5'- uGGGAGCucacauGCCCcgcccccGGCCCUCaCCCUCa -3'
miRNA:   3'- gUCUUCGu-----UGGGu------UCGGGAGcGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 62018 0.72 0.469734
Target:  5'- aGGAAGCggUaaAAGCUgagCUCGCCCUCg -3'
miRNA:   3'- gUCUUCGuuGggUUCGG---GAGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 27069 0.78 0.20717
Target:  5'- -cGAGGCccguGCCCGGGCCCUgGCCCg- -3'
miRNA:   3'- guCUUCGu---UGGGUUCGGGAgCGGGag -5'
5648 3' -57.5 NC_001806.1 + 20467 0.77 0.264296
Target:  5'- gGGAAGUcggGGCCCGGGCCC-CGCCCc- -3'
miRNA:   3'- gUCUUCG---UUGGGUUCGGGaGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 60604 0.76 0.277152
Target:  5'- cCGGggGCcACCCcGGCCCcaggUCGUCCUCc -3'
miRNA:   3'- -GUCuuCGuUGGGuUCGGG----AGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 138686 0.75 0.318702
Target:  5'- uGGAuGCGACCCAgaGGaCCCUCGCCUa- -3'
miRNA:   3'- gUCUuCGUUGGGU--UC-GGGAGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 117686 0.74 0.356772
Target:  5'- gAGAAGCucggGGCCCGAGCCCgcgUCGgccCCCUCc -3'
miRNA:   3'- gUCUUCG----UUGGGUUCGGG---AGC---GGGAG- -5'
5648 3' -57.5 NC_001806.1 + 69246 0.74 0.37287
Target:  5'- gGGGAGCAGCCCuccGCCggCGCCCa- -3'
miRNA:   3'- gUCUUCGUUGGGuu-CGGgaGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 10429 0.74 0.37287
Target:  5'- gCGGGAGUgccggcgaGACUUucGUCCUCGCCCUCg -3'
miRNA:   3'- -GUCUUCG--------UUGGGuuCGGGAGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 77867 0.72 0.460389
Target:  5'- uGGAuGCGGCggCCGAGCUCuacgUCGCCCUCg -3'
miRNA:   3'- gUCUuCGUUG--GGUUCGGG----AGCGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.