miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5648 3' -57.5 NC_001806.1 + 816 0.66 0.82334
Target:  5'- cCGGggGC-GCCCGcGCaccaccaccgccCCUCGCCCc- -3'
miRNA:   3'- -GUCuuCGuUGGGUuCG------------GGAGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 143427 0.66 0.82334
Target:  5'- --cGAGCGGCCC-GGCCCgCGCUCcCa -3'
miRNA:   3'- gucUUCGUUGGGuUCGGGaGCGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 5503 0.66 0.805897
Target:  5'- gAGGAGCAGCggaggCCGccGGCCCccCGCCCc- -3'
miRNA:   3'- gUCUUCGUUG-----GGU--UCGGGa-GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 27202 0.66 0.813829
Target:  5'- gCAGGAGCcGCgCAuauauacgcuuggAGCCagccCGCCCUCa -3'
miRNA:   3'- -GUCUUCGuUGgGU-------------UCGGga--GCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 75860 0.66 0.796029
Target:  5'- gGGAAcCAACgCCAAGgcggugaCCCUUGCCCUg -3'
miRNA:   3'- gUCUUcGUUG-GGUUC-------GGGAGCGGGAg -5'
5648 3' -57.5 NC_001806.1 + 612 0.66 0.796934
Target:  5'- cCAGcccucccCAGCCCcAGCCCUCcccggccccaGCCCUCc -3'
miRNA:   3'- -GUCuuc----GUUGGGuUCGGGAG----------CGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 143946 0.66 0.805897
Target:  5'- --cGAGCAcccccGCCCAcGCCCcCGCCCc- -3'
miRNA:   3'- gucUUCGU-----UGGGUuCGGGaGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 132687 0.66 0.805008
Target:  5'- uGGggGCcuGGCCCGcggugggGGCCagggUCGUCCUCc -3'
miRNA:   3'- gUCuuCG--UUGGGU-------UCGGg---AGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 73200 0.66 0.822484
Target:  5'- -cGccGCucGCCCGAGCCCccgggcgcagaccUCGCCCa- -3'
miRNA:   3'- guCuuCGu-UGGGUUCGGG-------------AGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 52637 0.66 0.814703
Target:  5'- gCGGgcGCGGCgcgacaaCGAGCCCcCGcCCCUCc -3'
miRNA:   3'- -GUCuuCGUUGg------GUUCGGGaGC-GGGAG- -5'
5648 3' -57.5 NC_001806.1 + 67172 0.66 0.796934
Target:  5'- cCAucAGCuGGCCCcAGgCCUCGCCCa- -3'
miRNA:   3'- -GUcuUCG-UUGGGuUCgGGAGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 4358 0.66 0.822484
Target:  5'- -cGAuGCGGCCCGcggaggccgcgggGGUCCUCGCCg-- -3'
miRNA:   3'- guCUuCGUUGGGU-------------UCGGGAGCGGgag -5'
5648 3' -57.5 NC_001806.1 + 65444 0.66 0.812078
Target:  5'- aGGGAGCGGgggaugccgcggccCCCGGGUCCUgggggCGCCCg- -3'
miRNA:   3'- gUCUUCGUU--------------GGGUUCGGGA-----GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 147297 0.66 0.796934
Target:  5'- uCAGggGgGuCCCGGGCCCacccuggccgCGCCCc- -3'
miRNA:   3'- -GUCuuCgUuGGGUUCGGGa---------GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 73442 0.66 0.796029
Target:  5'- cCGGAcGCAcACCCAggccgggguggccGGCCCggccgcCGCCCUg -3'
miRNA:   3'- -GUCUuCGU-UGGGU-------------UCGGGa-----GCGGGAg -5'
5648 3' -57.5 NC_001806.1 + 84981 0.66 0.82334
Target:  5'- -cGggGCcuuuucgccGCCCucGCCCagaCGCCCUCc -3'
miRNA:   3'- guCuuCGu--------UGGGuuCGGGa--GCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 49639 0.66 0.840083
Target:  5'- gGGAcGCGugCCGGGCCCggaGCUC-Cg -3'
miRNA:   3'- gUCUuCGUugGGUUCGGGag-CGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 66738 0.66 0.805897
Target:  5'- aCAGAAacGCcgcGCCCGGGCCCcccaGCCC-Ca -3'
miRNA:   3'- -GUCUU--CGu--UGGGUUCGGGag--CGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 60964 0.66 0.814703
Target:  5'- gCAGuuGCgGACCCAGGCCC-C-CCCa- -3'
miRNA:   3'- -GUCuuCG-UUGGGUUCGGGaGcGGGag -5'
5648 3' -57.5 NC_001806.1 + 72591 0.66 0.813829
Target:  5'- cCAGucGCcgccaccGACCCGGGCCCgUCGCgacgacagggCCUCc -3'
miRNA:   3'- -GUCuuCG-------UUGGGUUCGGG-AGCG----------GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.