Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 149421 | 0.66 | 0.805897 |
Target: 5'- uCAGGgggucccacGGCGAcCCCGGGCCCUgCGUCUg- -3' miRNA: 3'- -GUCU---------UCGUU-GGGUUCGGGA-GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 5503 | 0.66 | 0.805897 |
Target: 5'- gAGGAGCAGCggaggCCGccGGCCCccCGCCCc- -3' miRNA: 3'- gUCUUCGUUG-----GGU--UCGGGa-GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 66738 | 0.66 | 0.805897 |
Target: 5'- aCAGAAacGCcgcGCCCGGGCCCcccaGCCC-Ca -3' miRNA: 3'- -GUCUU--CGu--UGGGUUCGGGag--CGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 143946 | 0.66 | 0.805897 |
Target: 5'- --cGAGCAcccccGCCCAcGCCCcCGCCCc- -3' miRNA: 3'- gucUUCGU-----UGGGUuCGGGaGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 65444 | 0.66 | 0.812078 |
Target: 5'- aGGGAGCGGgggaugccgcggccCCCGGGUCCUgggggCGCCCg- -3' miRNA: 3'- gUCUUCGUU--------------GGGUUCGGGA-----GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 109043 | 0.67 | 0.778566 |
Target: 5'- uGGAGGgGGCUCAGGCCCaacgCgGCCC-Cg -3' miRNA: 3'- gUCUUCgUUGGGUUCGGGa---G-CGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 41193 | 0.67 | 0.78782 |
Target: 5'- aCAGGAgcugaaccGCAGCCaGAGCCCcgCGCCUa- -3' miRNA: 3'- -GUCUU--------CGUUGGgUUCGGGa-GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 47254 | 0.67 | 0.78782 |
Target: 5'- -cGggGCGccugAgCCAGGCCCagcucaUGCCCUCc -3' miRNA: 3'- guCuuCGU----UgGGUUCGGGa-----GCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 56516 | 0.67 | 0.78782 |
Target: 5'- aCAGcGGCAgGCCCGGGCCCggCGUUCc- -3' miRNA: 3'- -GUCuUCGU-UGGGUUCGGGa-GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 57594 | 0.67 | 0.769179 |
Target: 5'- gAGAguugGGCGGCCgccaAGGCCC-CGCCCcgUCa -3' miRNA: 3'- gUCU----UCGUUGGg---UUCGGGaGCGGG--AG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 1613 | 0.67 | 0.778566 |
Target: 5'- gCAGcGGCGcGCCCAGGCCCcagCGCgCg- -3' miRNA: 3'- -GUCuUCGU-UGGGUUCGGGa--GCGgGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 5890 | 0.67 | 0.769179 |
Target: 5'- aCGGcGGGCGGCCCAagGGCCgCcCGCCUUg -3' miRNA: 3'- -GUC-UUCGUUGGGU--UCGG-GaGCGGGAg -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 23552 | 0.67 | 0.765389 |
Target: 5'- gCGGcGGCAGCCCccgGGGCCCagccacacggcggCGCCCg- -3' miRNA: 3'- -GUCuUCGUUGGG---UUCGGGa------------GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 106692 | 0.67 | 0.759669 |
Target: 5'- cCGGggGCucuuCCCGGGCCCccgggCgGCCCcCg -3' miRNA: 3'- -GUCuuCGuu--GGGUUCGGGa----G-CGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 134995 | 0.67 | 0.759669 |
Target: 5'- ----cGguGCCCGAuGCCCcCGCCCUg -3' miRNA: 3'- gucuuCguUGGGUU-CGGGaGCGGGAg -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 33143 | 0.67 | 0.759669 |
Target: 5'- uCGGggGCcccucguCCCGggccguacgcGGCCUUCGCCC-Cg -3' miRNA: 3'- -GUCuuCGuu-----GGGU----------UCGGGAGCGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 30643 | 0.67 | 0.759669 |
Target: 5'- gGGggGCGcggccaggguggGCCCGGGaCCCcccugaCGUCCUCg -3' miRNA: 3'- gUCuuCGU------------UGGGUUC-GGGa-----GCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 55806 | 0.67 | 0.759669 |
Target: 5'- uGGAGGCAGuuUCCGAGCCCccggacaccccCGCCC-Cg -3' miRNA: 3'- gUCUUCGUU--GGGUUCGGGa----------GCGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 149802 | 0.67 | 0.759669 |
Target: 5'- uGGggGCGGCCCucAGGCCggcggguaCUCGCUC-Cg -3' miRNA: 3'- gUCuuCGUUGGG--UUCGG--------GAGCGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 57948 | 0.67 | 0.750046 |
Target: 5'- uCGGAcaGGCAugCaAGGCCCcCGCCuCUCc -3' miRNA: 3'- -GUCU--UCGUugGgUUCGGGaGCGG-GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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