miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5648 3' -57.5 NC_001806.1 + 116836 0.69 0.663945
Target:  5'- gGGAGGCcGCCCAgcucauucaccccgaAGCCC-CGgCCCUg -3'
miRNA:   3'- gUCUUCGuUGGGU---------------UCGGGaGC-GGGAg -5'
5648 3' -57.5 NC_001806.1 + 20569 0.69 0.65985
Target:  5'- -cGggGCGcggACCCAcccGCCCUCGCgCCcCg -3'
miRNA:   3'- guCuuCGU---UGGGUu--CGGGAGCG-GGaG- -5'
5648 3' -57.5 NC_001806.1 + 76151 0.69 0.63933
Target:  5'- gGGggGCGugCC-GGCCCUgCGCCa-- -3'
miRNA:   3'- gUCuuCGUugGGuUCGGGA-GCGGgag -5'
5648 3' -57.5 NC_001806.1 + 115308 0.68 0.690438
Target:  5'- cCAG-AGCGACCCGucccgGGCCUUCGCggCCa- -3'
miRNA:   3'- -GUCuUCGUUGGGU-----UCGGGAGCG--GGag -5'
5648 3' -57.5 NC_001806.1 + 135980 0.68 0.740318
Target:  5'- -cGAGGCGGCCgAcccGGCCUuggucucgUCGUCCUCc -3'
miRNA:   3'- guCUUCGUUGGgU---UCGGG--------AGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 150092 0.68 0.690438
Target:  5'- gGGAGGCAgGCCCAccgcggggcGGCCC-CGUCCcCg -3'
miRNA:   3'- gUCUUCGU-UGGGU---------UCGGGaGCGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 2312 0.68 0.690438
Target:  5'- -cGAGGCcccgccgccGgCCAGGUCCUCGCCCg- -3'
miRNA:   3'- guCUUCGu--------UgGGUUCGGGAGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 69898 0.68 0.690438
Target:  5'- -cGcGGCGACCCAGauccgcuuCCC-CGCCCUCg -3'
miRNA:   3'- guCuUCGUUGGGUUc-------GGGaGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 91174 0.68 0.720586
Target:  5'- aCGGccGCGGCCCGcGCCaaCGCCgUCg -3'
miRNA:   3'- -GUCuuCGUUGGGUuCGGgaGCGGgAG- -5'
5648 3' -57.5 NC_001806.1 + 125414 0.68 0.729508
Target:  5'- cCAGAcgacaucAGCugugGACCCGAGCUCccauUCGCCCg- -3'
miRNA:   3'- -GUCU-------UCG----UUGGGUUCGGG----AGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 10890 0.68 0.730495
Target:  5'- uGGAAGCAACgaAAcGUCCUCGCCgacaCUCa -3'
miRNA:   3'- gUCUUCGUUGggUU-CGGGAGCGG----GAG- -5'
5648 3' -57.5 NC_001806.1 + 21654 0.68 0.730495
Target:  5'- ----cGUcgGACuCCGGGUCCUCGUCCUCg -3'
miRNA:   3'- gucuuCG--UUG-GGUUCGGGAGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 112019 0.68 0.730495
Target:  5'- uCAGccuGGCcACCgAGGCCaUCGCCCUg -3'
miRNA:   3'- -GUCu--UCGuUGGgUUCGGgAGCGGGAg -5'
5648 3' -57.5 NC_001806.1 + 123231 0.68 0.730495
Target:  5'- gAGAuGCcGCCCAcgcGGCCCUgCGCCgaCg -3'
miRNA:   3'- gUCUuCGuUGGGU---UCGGGA-GCGGgaG- -5'
5648 3' -57.5 NC_001806.1 + 108515 0.68 0.731481
Target:  5'- aAGAAGCAcauccagguACCCGgcGGCCCgcgugcggcuggccgCGCCCg- -3'
miRNA:   3'- gUCUUCGU---------UGGGU--UCGGGa--------------GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 125570 0.68 0.740318
Target:  5'- uGGggGCA-CCCAcGCCCgCGaCCCg- -3'
miRNA:   3'- gUCuuCGUuGGGUuCGGGaGC-GGGag -5'
5648 3' -57.5 NC_001806.1 + 23431 0.68 0.740318
Target:  5'- ----cGgGGCCCGAGCCCgccccCGCCCa- -3'
miRNA:   3'- gucuuCgUUGGGUUCGGGa----GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 16874 0.68 0.740318
Target:  5'- cCGGggGCGGggagUCCAGGCacgCGUCCUCg -3'
miRNA:   3'- -GUCuuCGUU----GGGUUCGggaGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 26417 0.68 0.740318
Target:  5'- ---cGGCcGCCCGGGCCCacgggCGCCgUCc -3'
miRNA:   3'- gucuUCGuUGGGUUCGGGa----GCGGgAG- -5'
5648 3' -57.5 NC_001806.1 + 49360 0.68 0.740318
Target:  5'- cCGGcAGCGcCCCGGGCCCgaugCGgCCCg- -3'
miRNA:   3'- -GUCuUCGUuGGGUUCGGGa---GC-GGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.