miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5648 3' -57.5 NC_001806.1 + 150092 0.68 0.690438
Target:  5'- gGGAGGCAgGCCCAccgcggggcGGCCC-CGUCCcCg -3'
miRNA:   3'- gUCUUCGU-UGGGU---------UCGGGaGCGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 149935 0.69 0.65985
Target:  5'- aGGggGCGGCCCGAGUCU--GCCUg- -3'
miRNA:   3'- gUCuuCGUUGGGUUCGGGagCGGGag -5'
5648 3' -57.5 NC_001806.1 + 149802 0.67 0.759669
Target:  5'- uGGggGCGGCCCucAGGCCggcggguaCUCGCUC-Cg -3'
miRNA:   3'- gUCuuCGUUGGG--UUCGG--------GAGCGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 149421 0.66 0.805897
Target:  5'- uCAGGgggucccacGGCGAcCCCGGGCCCUgCGUCUg- -3'
miRNA:   3'- -GUCU---------UCGUU-GGGUUCGGGA-GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 147507 0.68 0.700548
Target:  5'- aGGggGCGGCgCCGcgggagGGCCCgUGCCCa- -3'
miRNA:   3'- gUCuuCGUUG-GGU------UCGGGaGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 147297 0.66 0.796934
Target:  5'- uCAGggGgGuCCCGGGCCCacccuggccgCGCCCc- -3'
miRNA:   3'- -GUCuuCgUuGGGUUCGGGa---------GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 143946 0.66 0.805897
Target:  5'- --cGAGCAcccccGCCCAcGCCCcCGCCCc- -3'
miRNA:   3'- gucUUCGU-----UGGGUuCGGGaGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 143427 0.66 0.82334
Target:  5'- --cGAGCGGCCC-GGCCCgCGCUCcCa -3'
miRNA:   3'- gucUUCGUUGGGuUCGGGaGCGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 140242 0.66 0.840083
Target:  5'- gCGGGAGauucaaCUGAGCCC-CGCCCUg -3'
miRNA:   3'- -GUCUUCguug--GGUUCGGGaGCGGGAg -5'
5648 3' -57.5 NC_001806.1 + 138686 0.75 0.318702
Target:  5'- uGGAuGCGACCCAgaGGaCCCUCGCCUa- -3'
miRNA:   3'- gUCUuCGUUGGGU--UC-GGGAGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 135980 0.68 0.740318
Target:  5'- -cGAGGCGGCCgAcccGGCCUuggucucgUCGUCCUCc -3'
miRNA:   3'- guCUUCGUUGGgU---UCGGG--------AGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 134995 0.67 0.759669
Target:  5'- ----cGguGCCCGAuGCCCcCGCCCUg -3'
miRNA:   3'- gucuuCguUGGGUU-CGGGaGCGGGAg -5'
5648 3' -57.5 NC_001806.1 + 132687 0.66 0.805008
Target:  5'- uGGggGCcuGGCCCGcggugggGGCCagggUCGUCCUCc -3'
miRNA:   3'- gUCuuCG--UUGGGU-------UCGGg---AGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 125570 0.68 0.740318
Target:  5'- uGGggGCA-CCCAcGCCCgCGaCCCg- -3'
miRNA:   3'- gUCuuCGUuGGGUuCGGGaGC-GGGag -5'
5648 3' -57.5 NC_001806.1 + 125414 0.68 0.729508
Target:  5'- cCAGAcgacaucAGCugugGACCCGAGCUCccauUCGCCCg- -3'
miRNA:   3'- -GUCU-------UCG----UUGGGUUCGGG----AGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 123231 0.68 0.730495
Target:  5'- gAGAuGCcGCCCAcgcGGCCCUgCGCCgaCg -3'
miRNA:   3'- gUCUuCGuUGGGU---UCGGGA-GCGGgaG- -5'
5648 3' -57.5 NC_001806.1 + 117686 0.74 0.356772
Target:  5'- gAGAAGCucggGGCCCGAGCCCgcgUCGgccCCCUCc -3'
miRNA:   3'- gUCUUCG----UUGGGUUCGGG---AGC---GGGAG- -5'
5648 3' -57.5 NC_001806.1 + 116836 0.69 0.663945
Target:  5'- gGGAGGCcGCCCAgcucauucaccccgaAGCCC-CGgCCCUg -3'
miRNA:   3'- gUCUUCGuUGGGU---------------UCGGGaGC-GGGAg -5'
5648 3' -57.5 NC_001806.1 + 115308 0.68 0.690438
Target:  5'- cCAG-AGCGACCCGucccgGGCCUUCGCggCCa- -3'
miRNA:   3'- -GUCuUCGUUGGGU-----UCGGGAGCG--GGag -5'
5648 3' -57.5 NC_001806.1 + 112019 0.68 0.730495
Target:  5'- uCAGccuGGCcACCgAGGCCaUCGCCCUg -3'
miRNA:   3'- -GUCu--UCGuUGGgUUCGGgAGCGGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.