miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5648 3' -57.5 NC_001806.1 + 109043 0.67 0.778566
Target:  5'- uGGAGGgGGCUCAGGCCCaacgCgGCCC-Cg -3'
miRNA:   3'- gUCUUCgUUGGGUUCGGGa---G-CGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 108515 0.68 0.731481
Target:  5'- aAGAAGCAcauccagguACCCGgcGGCCCgcgugcggcuggccgCGCCCg- -3'
miRNA:   3'- gUCUUCGU---------UGGGU--UCGGGa--------------GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 106692 0.67 0.759669
Target:  5'- cCGGggGCucuuCCCGGGCCCccgggCgGCCCcCg -3'
miRNA:   3'- -GUCuuCGuu--GGGUUCGGGa----G-CGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 104795 0.72 0.488707
Target:  5'- uGGGAGCucacauGCCCcgcccccGGCCCUCaCCCUCa -3'
miRNA:   3'- gUCUUCGu-----UGGGu------UCGGGAGcGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 96492 0.68 0.69954
Target:  5'- gCGGccGCGACCCAggcggcgaacgggGGCCCU-GCCaCUCc -3'
miRNA:   3'- -GUCuuCGUUGGGU-------------UCGGGAgCGG-GAG- -5'
5648 3' -57.5 NC_001806.1 + 91174 0.68 0.720586
Target:  5'- aCGGccGCGGCCCGcGCCaaCGCCgUCg -3'
miRNA:   3'- -GUCuuCGUUGGGUuCGGgaGCGGgAG- -5'
5648 3' -57.5 NC_001806.1 + 90540 0.67 0.776699
Target:  5'- gGGAGGCGcugugugagcGCCUcGGCCUggacccggaccgCGCCCUCc -3'
miRNA:   3'- gUCUUCGU----------UGGGuUCGGGa-----------GCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 88998 0.68 0.689424
Target:  5'- cCAGAAGCcGCCCGA-CCCgacgcggaggacgUCGCgCUCg -3'
miRNA:   3'- -GUCUUCGuUGGGUUcGGG-------------AGCGgGAG- -5'
5648 3' -57.5 NC_001806.1 + 84981 0.66 0.82334
Target:  5'- -cGggGCcuuuucgccGCCCucGCCCagaCGCCCUCc -3'
miRNA:   3'- guCuuCGu--------UGGGuuCGGGa--GCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 83766 0.67 0.78782
Target:  5'- gCAGucuGCcACCCGGGCCCUCaucggaaccuuGgCCUCc -3'
miRNA:   3'- -GUCuu-CGuUGGGUUCGGGAG-----------CgGGAG- -5'
5648 3' -57.5 NC_001806.1 + 83694 1.08 0.002012
Target:  5'- cCAGAAGCAACCCAAGCCCUCGCCCUCc -3'
miRNA:   3'- -GUCUUCGUUGGGUUCGGGAGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 83575 0.68 0.700548
Target:  5'- aAGAAgGCGACCCuggucGGCuCCUucgcacgcuuUGCCCUCa -3'
miRNA:   3'- gUCUU-CGUUGGGu----UCG-GGA----------GCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 77867 0.72 0.460389
Target:  5'- uGGAuGCGGCggCCGAGCUCuacgUCGCCCUCg -3'
miRNA:   3'- gUCUuCGUUG--GGUUCGGG----AGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 76353 0.68 0.690438
Target:  5'- gCAGggGUcACCCu-GCCCU-GCCCg- -3'
miRNA:   3'- -GUCuuCGuUGGGuuCGGGAgCGGGag -5'
5648 3' -57.5 NC_001806.1 + 76151 0.69 0.63933
Target:  5'- gGGggGCGugCC-GGCCCUgCGCCa-- -3'
miRNA:   3'- gUCuuCGUugGGuUCGGGA-GCGGgag -5'
5648 3' -57.5 NC_001806.1 + 75860 0.66 0.796029
Target:  5'- gGGAAcCAACgCCAAGgcggugaCCCUUGCCCUg -3'
miRNA:   3'- gUCUUcGUUG-GGUUC-------GGGAGCGGGAg -5'
5648 3' -57.5 NC_001806.1 + 73996 0.68 0.720586
Target:  5'- -cGggGCGGCCCcgcaggGGGCUCcgCGCCCa- -3'
miRNA:   3'- guCuuCGUUGGG------UUCGGGa-GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 73890 0.7 0.564704
Target:  5'- uGGAGGCGgaggaucgccagauGCgCgAGGCCCUCgacGCCCUCg -3'
miRNA:   3'- gUCUUCGU--------------UG-GgUUCGGGAG---CGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 73442 0.66 0.796029
Target:  5'- cCGGAcGCAcACCCAggccgggguggccGGCCCggccgcCGCCCUg -3'
miRNA:   3'- -GUCUuCGU-UGGGU-------------UCGGGa-----GCGGGAg -5'
5648 3' -57.5 NC_001806.1 + 73200 0.66 0.822484
Target:  5'- -cGccGCucGCCCGAGCCCccgggcgcagaccUCGCCCa- -3'
miRNA:   3'- guCuuCGu-UGGGUUCGGG-------------AGCGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.