miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5648 3' -57.5 NC_001806.1 + 72591 0.66 0.813829
Target:  5'- cCAGucGCcgccaccGACCCGGGCCCgUCGCgacgacagggCCUCc -3'
miRNA:   3'- -GUCuuCG-------UUGGGUUCGGG-AGCG----------GGAG- -5'
5648 3' -57.5 NC_001806.1 + 69898 0.68 0.690438
Target:  5'- -cGcGGCGACCCAGauccgcuuCCC-CGCCCUCg -3'
miRNA:   3'- guCuUCGUUGGGUUc-------GGGaGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 69246 0.74 0.37287
Target:  5'- gGGGAGCAGCCCuccGCCggCGCCCa- -3'
miRNA:   3'- gUCUUCGUUGGGuu-CGGgaGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 67172 0.66 0.796934
Target:  5'- cCAucAGCuGGCCCcAGgCCUCGCCCa- -3'
miRNA:   3'- -GUcuUCG-UUGGGuUCgGGAGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 66738 0.66 0.805897
Target:  5'- aCAGAAacGCcgcGCCCGGGCCCcccaGCCC-Ca -3'
miRNA:   3'- -GUCUU--CGu--UGGGUUCGGGag--CGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 65444 0.66 0.812078
Target:  5'- aGGGAGCGGgggaugccgcggccCCCGGGUCCUgggggCGCCCg- -3'
miRNA:   3'- gUCUUCGUU--------------GGGUUCGGGA-----GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 62018 0.72 0.469734
Target:  5'- aGGAAGCggUaaAAGCUgagCUCGCCCUCg -3'
miRNA:   3'- gUCUUCGuuGggUUCGG---GAGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 60964 0.66 0.814703
Target:  5'- gCAGuuGCgGACCCAGGCCC-C-CCCa- -3'
miRNA:   3'- -GUCuuCG-UUGGGUUCGGGaGcGGGag -5'
5648 3' -57.5 NC_001806.1 + 60604 0.76 0.277152
Target:  5'- cCGGggGCcACCCcGGCCCcaggUCGUCCUCc -3'
miRNA:   3'- -GUCuuCGuUGGGuUCGGG----AGCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 57948 0.67 0.750046
Target:  5'- uCGGAcaGGCAugCaAGGCCCcCGCCuCUCc -3'
miRNA:   3'- -GUCU--UCGUugGgUUCGGGaGCGG-GAG- -5'
5648 3' -57.5 NC_001806.1 + 57594 0.67 0.769179
Target:  5'- gAGAguugGGCGGCCgccaAGGCCC-CGCCCcgUCa -3'
miRNA:   3'- gUCU----UCGUUGGg---UUCGGGaGCGGG--AG- -5'
5648 3' -57.5 NC_001806.1 + 56516 0.67 0.78782
Target:  5'- aCAGcGGCAgGCCCGGGCCCggCGUUCc- -3'
miRNA:   3'- -GUCuUCGU-UGGGUUCGGGa-GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 55806 0.67 0.759669
Target:  5'- uGGAGGCAGuuUCCGAGCCCccggacaccccCGCCC-Cg -3'
miRNA:   3'- gUCUUCGUU--GGGUUCGGGa----------GCGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 52637 0.66 0.814703
Target:  5'- gCGGgcGCGGCgcgacaaCGAGCCCcCGcCCCUCc -3'
miRNA:   3'- -GUCuuCGUUGg------GUUCGGGaGC-GGGAG- -5'
5648 3' -57.5 NC_001806.1 + 49639 0.66 0.840083
Target:  5'- gGGAcGCGugCCGGGCCCggaGCUC-Cg -3'
miRNA:   3'- gUCUuCGUugGGUUCGGGag-CGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 49360 0.68 0.740318
Target:  5'- cCGGcAGCGcCCCGGGCCCgaugCGgCCCg- -3'
miRNA:   3'- -GUCuUCGUuGGGUUCGGGa---GC-GGGag -5'
5648 3' -57.5 NC_001806.1 + 49124 0.7 0.608528
Target:  5'- aGGAGGCGcgcauccacccGCCCccGCgCCUCGCCCg- -3'
miRNA:   3'- gUCUUCGU-----------UGGGuuCG-GGAGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 47254 0.67 0.78782
Target:  5'- -cGggGCGccugAgCCAGGCCCagcucaUGCCCUCc -3'
miRNA:   3'- guCuuCGU----UgGGUUCGGGa-----GCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 46673 0.69 0.680278
Target:  5'- --cGAGCGACCuCGAGCCC-CaGCCCg- -3'
miRNA:   3'- gucUUCGUUGG-GUUCGGGaG-CGGGag -5'
5648 3' -57.5 NC_001806.1 + 43869 0.68 0.710601
Target:  5'- cCAGAccuacAGCcucCCCAAccGCaCCUCGCCCUg -3'
miRNA:   3'- -GUCU-----UCGuu-GGGUU--CG-GGAGCGGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.