Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 106692 | 0.67 | 0.759669 |
Target: 5'- cCGGggGCucuuCCCGGGCCCccgggCgGCCCcCg -3' miRNA: 3'- -GUCuuCGuu--GGGUUCGGGa----G-CGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 30643 | 0.67 | 0.759669 |
Target: 5'- gGGggGCGcggccaggguggGCCCGGGaCCCcccugaCGUCCUCg -3' miRNA: 3'- gUCuuCGU------------UGGGUUC-GGGa-----GCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 57948 | 0.67 | 0.750046 |
Target: 5'- uCGGAcaGGCAugCaAGGCCCcCGCCuCUCc -3' miRNA: 3'- -GUCU--UCGUugGgUUCGGGaGCGG-GAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 49360 | 0.68 | 0.740318 |
Target: 5'- cCGGcAGCGcCCCGGGCCCgaugCGgCCCg- -3' miRNA: 3'- -GUCuUCGUuGGGUUCGGGa---GC-GGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 26417 | 0.68 | 0.740318 |
Target: 5'- ---cGGCcGCCCGGGCCCacgggCGCCgUCc -3' miRNA: 3'- gucuUCGuUGGGUUCGGGa----GCGGgAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 16874 | 0.68 | 0.740318 |
Target: 5'- cCGGggGCGGggagUCCAGGCacgCGUCCUCg -3' miRNA: 3'- -GUCuuCGUU----GGGUUCGggaGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 135980 | 0.68 | 0.740318 |
Target: 5'- -cGAGGCGGCCgAcccGGCCUuggucucgUCGUCCUCc -3' miRNA: 3'- guCUUCGUUGGgU---UCGGG--------AGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 23431 | 0.68 | 0.740318 |
Target: 5'- ----cGgGGCCCGAGCCCgccccCGCCCa- -3' miRNA: 3'- gucuuCgUUGGGUUCGGGa----GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 125570 | 0.68 | 0.740318 |
Target: 5'- uGGggGCA-CCCAcGCCCgCGaCCCg- -3' miRNA: 3'- gUCuuCGUuGGGUuCGGGaGC-GGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 108515 | 0.68 | 0.731481 |
Target: 5'- aAGAAGCAcauccagguACCCGgcGGCCCgcgugcggcuggccgCGCCCg- -3' miRNA: 3'- gUCUUCGU---------UGGGU--UCGGGa--------------GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 10890 | 0.68 | 0.730495 |
Target: 5'- uGGAAGCAACgaAAcGUCCUCGCCgacaCUCa -3' miRNA: 3'- gUCUUCGUUGggUU-CGGGAGCGG----GAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 21654 | 0.68 | 0.730495 |
Target: 5'- ----cGUcgGACuCCGGGUCCUCGUCCUCg -3' miRNA: 3'- gucuuCG--UUG-GGUUCGGGAGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 123231 | 0.68 | 0.730495 |
Target: 5'- gAGAuGCcGCCCAcgcGGCCCUgCGCCgaCg -3' miRNA: 3'- gUCUuCGuUGGGU---UCGGGA-GCGGgaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 112019 | 0.68 | 0.730495 |
Target: 5'- uCAGccuGGCcACCgAGGCCaUCGCCCUg -3' miRNA: 3'- -GUCu--UCGuUGGgUUCGGgAGCGGGAg -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 125414 | 0.68 | 0.729508 |
Target: 5'- cCAGAcgacaucAGCugugGACCCGAGCUCccauUCGCCCg- -3' miRNA: 3'- -GUCU-------UCG----UUGGGUUCGGG----AGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 73996 | 0.68 | 0.720586 |
Target: 5'- -cGggGCGGCCCcgcaggGGGCUCcgCGCCCa- -3' miRNA: 3'- guCuuCGUUGGG------UUCGGGa-GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 91174 | 0.68 | 0.720586 |
Target: 5'- aCGGccGCGGCCCGcGCCaaCGCCgUCg -3' miRNA: 3'- -GUCuuCGUUGGGUuCGGgaGCGGgAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 41004 | 0.68 | 0.720586 |
Target: 5'- gGGAuguguccauGGC-GCCCGGGUCCUCcGCCCa- -3' miRNA: 3'- gUCU---------UCGuUGGGUUCGGGAG-CGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 43869 | 0.68 | 0.710601 |
Target: 5'- cCAGAccuacAGCcucCCCAAccGCaCCUCGCCCUg -3' miRNA: 3'- -GUCU-----UCGuu-GGGUU--CG-GGAGCGGGAg -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 5608 | 0.68 | 0.707591 |
Target: 5'- uGGccGCGGCCCGuuggucgaacccccGGCCC-CGCCCa- -3' miRNA: 3'- gUCuuCGUUGGGU--------------UCGGGaGCGGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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