miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5648 3' -57.5 NC_001806.1 + 612 0.66 0.796934
Target:  5'- cCAGcccucccCAGCCCcAGCCCUCcccggccccaGCCCUCc -3'
miRNA:   3'- -GUCuuc----GUUGGGuUCGGGAG----------CGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 67172 0.66 0.796934
Target:  5'- cCAucAGCuGGCCCcAGgCCUCGCCCa- -3'
miRNA:   3'- -GUcuUCG-UUGGGuUCgGGAGCGGGag -5'
5648 3' -57.5 NC_001806.1 + 147297 0.66 0.796934
Target:  5'- uCAGggGgGuCCCGGGCCCacccuggccgCGCCCc- -3'
miRNA:   3'- -GUCuuCgUuGGGUUCGGGa---------GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 75860 0.66 0.796029
Target:  5'- gGGAAcCAACgCCAAGgcggugaCCCUUGCCCUg -3'
miRNA:   3'- gUCUUcGUUG-GGUUC-------GGGAGCGGGAg -5'
5648 3' -57.5 NC_001806.1 + 73442 0.66 0.796029
Target:  5'- cCGGAcGCAcACCCAggccgggguggccGGCCCggccgcCGCCCUg -3'
miRNA:   3'- -GUCUuCGU-UGGGU-------------UCGGGa-----GCGGGAg -5'
5648 3' -57.5 NC_001806.1 + 83766 0.67 0.78782
Target:  5'- gCAGucuGCcACCCGGGCCCUCaucggaaccuuGgCCUCc -3'
miRNA:   3'- -GUCuu-CGuUGGGUUCGGGAG-----------CgGGAG- -5'
5648 3' -57.5 NC_001806.1 + 41193 0.67 0.78782
Target:  5'- aCAGGAgcugaaccGCAGCCaGAGCCCcgCGCCUa- -3'
miRNA:   3'- -GUCUU--------CGUUGGgUUCGGGa-GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 56516 0.67 0.78782
Target:  5'- aCAGcGGCAgGCCCGGGCCCggCGUUCc- -3'
miRNA:   3'- -GUCuUCGU-UGGGUUCGGGa-GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 47254 0.67 0.78782
Target:  5'- -cGggGCGccugAgCCAGGCCCagcucaUGCCCUCc -3'
miRNA:   3'- guCuuCGU----UgGGUUCGGGa-----GCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 109043 0.67 0.778566
Target:  5'- uGGAGGgGGCUCAGGCCCaacgCgGCCC-Cg -3'
miRNA:   3'- gUCUUCgUUGGGUUCGGGa---G-CGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 1613 0.67 0.778566
Target:  5'- gCAGcGGCGcGCCCAGGCCCcagCGCgCg- -3'
miRNA:   3'- -GUCuUCGU-UGGGUUCGGGa--GCGgGag -5'
5648 3' -57.5 NC_001806.1 + 90540 0.67 0.776699
Target:  5'- gGGAGGCGcugugugagcGCCUcGGCCUggacccggaccgCGCCCUCc -3'
miRNA:   3'- gUCUUCGU----------UGGGuUCGGGa-----------GCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 5890 0.67 0.769179
Target:  5'- aCGGcGGGCGGCCCAagGGCCgCcCGCCUUg -3'
miRNA:   3'- -GUC-UUCGUUGGGU--UCGG-GaGCGGGAg -5'
5648 3' -57.5 NC_001806.1 + 18075 0.67 0.769179
Target:  5'- cCAGAcgAGCAACCCAcaucgccgGGCCgUgGUCCg- -3'
miRNA:   3'- -GUCU--UCGUUGGGU--------UCGGgAgCGGGag -5'
5648 3' -57.5 NC_001806.1 + 57594 0.67 0.769179
Target:  5'- gAGAguugGGCGGCCgccaAGGCCC-CGCCCcgUCa -3'
miRNA:   3'- gUCU----UCGUUGGg---UUCGGGaGCGGG--AG- -5'
5648 3' -57.5 NC_001806.1 + 23552 0.67 0.765389
Target:  5'- gCGGcGGCAGCCCccgGGGCCCagccacacggcggCGCCCg- -3'
miRNA:   3'- -GUCuUCGUUGGG---UUCGGGa------------GCGGGag -5'
5648 3' -57.5 NC_001806.1 + 134995 0.67 0.759669
Target:  5'- ----cGguGCCCGAuGCCCcCGCCCUg -3'
miRNA:   3'- gucuuCguUGGGUU-CGGGaGCGGGAg -5'
5648 3' -57.5 NC_001806.1 + 33143 0.67 0.759669
Target:  5'- uCGGggGCcccucguCCCGggccguacgcGGCCUUCGCCC-Cg -3'
miRNA:   3'- -GUCuuCGuu-----GGGU----------UCGGGAGCGGGaG- -5'
5648 3' -57.5 NC_001806.1 + 30643 0.67 0.759669
Target:  5'- gGGggGCGcggccaggguggGCCCGGGaCCCcccugaCGUCCUCg -3'
miRNA:   3'- gUCuuCGU------------UGGGUUC-GGGa-----GCGGGAG- -5'
5648 3' -57.5 NC_001806.1 + 55806 0.67 0.759669
Target:  5'- uGGAGGCAGuuUCCGAGCCCccggacaccccCGCCC-Cg -3'
miRNA:   3'- gUCUUCGUU--GGGUUCGGGa----------GCGGGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.