Results 61 - 80 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 57594 | 0.67 | 0.769179 |
Target: 5'- gAGAguugGGCGGCCgccaAGGCCC-CGCCCcgUCa -3' miRNA: 3'- gUCU----UCGUUGGg---UUCGGGaGCGGG--AG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 90540 | 0.67 | 0.776699 |
Target: 5'- gGGAGGCGcugugugagcGCCUcGGCCUggacccggaccgCGCCCUCc -3' miRNA: 3'- gUCUUCGU----------UGGGuUCGGGa-----------GCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 1613 | 0.67 | 0.778566 |
Target: 5'- gCAGcGGCGcGCCCAGGCCCcagCGCgCg- -3' miRNA: 3'- -GUCuUCGU-UGGGUUCGGGa--GCGgGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 109043 | 0.67 | 0.778566 |
Target: 5'- uGGAGGgGGCUCAGGCCCaacgCgGCCC-Cg -3' miRNA: 3'- gUCUUCgUUGGGUUCGGGa---G-CGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 83766 | 0.67 | 0.78782 |
Target: 5'- gCAGucuGCcACCCGGGCCCUCaucggaaccuuGgCCUCc -3' miRNA: 3'- -GUCuu-CGuUGGGUUCGGGAG-----------CgGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 41193 | 0.67 | 0.78782 |
Target: 5'- aCAGGAgcugaaccGCAGCCaGAGCCCcgCGCCUa- -3' miRNA: 3'- -GUCUU--------CGUUGGgUUCGGGa-GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 47254 | 0.67 | 0.78782 |
Target: 5'- -cGggGCGccugAgCCAGGCCCagcucaUGCCCUCc -3' miRNA: 3'- guCuuCGU----UgGGUUCGGGa-----GCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 56516 | 0.67 | 0.78782 |
Target: 5'- aCAGcGGCAgGCCCGGGCCCggCGUUCc- -3' miRNA: 3'- -GUCuUCGU-UGGGUUCGGGa-GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 75860 | 0.66 | 0.796029 |
Target: 5'- gGGAAcCAACgCCAAGgcggugaCCCUUGCCCUg -3' miRNA: 3'- gUCUUcGUUG-GGUUC-------GGGAGCGGGAg -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 73442 | 0.66 | 0.796029 |
Target: 5'- cCGGAcGCAcACCCAggccgggguggccGGCCCggccgcCGCCCUg -3' miRNA: 3'- -GUCUuCGU-UGGGU-------------UCGGGa-----GCGGGAg -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 612 | 0.66 | 0.796934 |
Target: 5'- cCAGcccucccCAGCCCcAGCCCUCcccggccccaGCCCUCc -3' miRNA: 3'- -GUCuuc----GUUGGGuUCGGGAG----------CGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 147297 | 0.66 | 0.796934 |
Target: 5'- uCAGggGgGuCCCGGGCCCacccuggccgCGCCCc- -3' miRNA: 3'- -GUCuuCgUuGGGUUCGGGa---------GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 67172 | 0.66 | 0.796934 |
Target: 5'- cCAucAGCuGGCCCcAGgCCUCGCCCa- -3' miRNA: 3'- -GUcuUCG-UUGGGuUCgGGAGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 132687 | 0.66 | 0.805008 |
Target: 5'- uGGggGCcuGGCCCGcggugggGGCCagggUCGUCCUCc -3' miRNA: 3'- gUCuuCG--UUGGGU-------UCGGg---AGCGGGAG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 149421 | 0.66 | 0.805897 |
Target: 5'- uCAGGgggucccacGGCGAcCCCGGGCCCUgCGUCUg- -3' miRNA: 3'- -GUCU---------UCGUU-GGGUUCGGGA-GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 5503 | 0.66 | 0.805897 |
Target: 5'- gAGGAGCAGCggaggCCGccGGCCCccCGCCCc- -3' miRNA: 3'- gUCUUCGUUG-----GGU--UCGGGa-GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 66738 | 0.66 | 0.805897 |
Target: 5'- aCAGAAacGCcgcGCCCGGGCCCcccaGCCC-Ca -3' miRNA: 3'- -GUCUU--CGu--UGGGUUCGGGag--CGGGaG- -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 143946 | 0.66 | 0.805897 |
Target: 5'- --cGAGCAcccccGCCCAcGCCCcCGCCCc- -3' miRNA: 3'- gucUUCGU-----UGGGUuCGGGaGCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 65444 | 0.66 | 0.812078 |
Target: 5'- aGGGAGCGGgggaugccgcggccCCCGGGUCCUgggggCGCCCg- -3' miRNA: 3'- gUCUUCGUU--------------GGGUUCGGGA-----GCGGGag -5' |
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5648 | 3' | -57.5 | NC_001806.1 | + | 27202 | 0.66 | 0.813829 |
Target: 5'- gCAGGAGCcGCgCAuauauacgcuuggAGCCagccCGCCCUCa -3' miRNA: 3'- -GUCUUCGuUGgGU-------------UCGGga--GCGGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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