Results 61 - 80 of 93 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 77867 | 0.72 | 0.460389 |
Target: 5'- uGGAuGCGGCggCCGAGCUCuacgUCGCCCUCg -3' miRNA: 3'- gUCUuCGUUG--GGUUCGGG----AGCGGGAG- -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 83575 | 0.68 | 0.700548 |
Target: 5'- aAGAAgGCGACCCuggucGGCuCCUucgcacgcuuUGCCCUCa -3' miRNA: 3'- gUCUU-CGUUGGGu----UCG-GGA----------GCGGGAG- -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 83694 | 1.08 | 0.002012 |
Target: 5'- cCAGAAGCAACCCAAGCCCUCGCCCUCc -3' miRNA: 3'- -GUCUUCGUUGGGUUCGGGAGCGGGAG- -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 83766 | 0.67 | 0.78782 |
Target: 5'- gCAGucuGCcACCCGGGCCCUCaucggaaccuuGgCCUCc -3' miRNA: 3'- -GUCuu-CGuUGGGUUCGGGAG-----------CgGGAG- -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 84981 | 0.66 | 0.82334 |
Target: 5'- -cGggGCcuuuucgccGCCCucGCCCagaCGCCCUCc -3' miRNA: 3'- guCuuCGu--------UGGGuuCGGGa--GCGGGAG- -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 88998 | 0.68 | 0.689424 |
Target: 5'- cCAGAAGCcGCCCGA-CCCgacgcggaggacgUCGCgCUCg -3' miRNA: 3'- -GUCUUCGuUGGGUUcGGG-------------AGCGgGAG- -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 90540 | 0.67 | 0.776699 |
Target: 5'- gGGAGGCGcugugugagcGCCUcGGCCUggacccggaccgCGCCCUCc -3' miRNA: 3'- gUCUUCGU----------UGGGuUCGGGa-----------GCGGGAG- -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 91174 | 0.68 | 0.720586 |
Target: 5'- aCGGccGCGGCCCGcGCCaaCGCCgUCg -3' miRNA: 3'- -GUCuuCGUUGGGUuCGGgaGCGGgAG- -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 96492 | 0.68 | 0.69954 |
Target: 5'- gCGGccGCGACCCAggcggcgaacgggGGCCCU-GCCaCUCc -3' miRNA: 3'- -GUCuuCGUUGGGU-------------UCGGGAgCGG-GAG- -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 104795 | 0.72 | 0.488707 |
Target: 5'- uGGGAGCucacauGCCCcgcccccGGCCCUCaCCCUCa -3' miRNA: 3'- gUCUUCGu-----UGGGu------UCGGGAGcGGGAG- -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 106692 | 0.67 | 0.759669 |
Target: 5'- cCGGggGCucuuCCCGGGCCCccgggCgGCCCcCg -3' miRNA: 3'- -GUCuuCGuu--GGGUUCGGGa----G-CGGGaG- -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 108515 | 0.68 | 0.731481 |
Target: 5'- aAGAAGCAcauccagguACCCGgcGGCCCgcgugcggcuggccgCGCCCg- -3' miRNA: 3'- gUCUUCGU---------UGGGU--UCGGGa--------------GCGGGag -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 109043 | 0.67 | 0.778566 |
Target: 5'- uGGAGGgGGCUCAGGCCCaacgCgGCCC-Cg -3' miRNA: 3'- gUCUUCgUUGGGUUCGGGa---G-CGGGaG- -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 112019 | 0.68 | 0.730495 |
Target: 5'- uCAGccuGGCcACCgAGGCCaUCGCCCUg -3' miRNA: 3'- -GUCu--UCGuUGGgUUCGGgAGCGGGAg -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 115308 | 0.68 | 0.690438 |
Target: 5'- cCAG-AGCGACCCGucccgGGCCUUCGCggCCa- -3' miRNA: 3'- -GUCuUCGUUGGGU-----UCGGGAGCG--GGag -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 116836 | 0.69 | 0.663945 |
Target: 5'- gGGAGGCcGCCCAgcucauucaccccgaAGCCC-CGgCCCUg -3' miRNA: 3'- gUCUUCGuUGGGU---------------UCGGGaGC-GGGAg -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 117686 | 0.74 | 0.356772 |
Target: 5'- gAGAAGCucggGGCCCGAGCCCgcgUCGgccCCCUCc -3' miRNA: 3'- gUCUUCG----UUGGGUUCGGG---AGC---GGGAG- -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 123231 | 0.68 | 0.730495 |
Target: 5'- gAGAuGCcGCCCAcgcGGCCCUgCGCCgaCg -3' miRNA: 3'- gUCUuCGuUGGGU---UCGGGA-GCGGgaG- -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 125414 | 0.68 | 0.729508 |
Target: 5'- cCAGAcgacaucAGCugugGACCCGAGCUCccauUCGCCCg- -3' miRNA: 3'- -GUCU-------UCG----UUGGGUUCGGG----AGCGGGag -5' |
|||||||
5648 | 3' | -57.5 | NC_001806.1 | + | 125570 | 0.68 | 0.740318 |
Target: 5'- uGGggGCA-CCCAcGCCCgCGaCCCg- -3' miRNA: 3'- gUCuuCGUuGGGUuCGGGaGC-GGGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home