Results 81 - 100 of 126 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 112681 | 0.7 | 0.72234 |
Target: 5'- cUCGAGagcgccccCCAGACGa-CGCG-CGUGCGCg -3' miRNA: 3'- -AGCUU--------GGUCUGCcgGCGCaGUACGCG- -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 30502 | 0.7 | 0.72234 |
Target: 5'- gUCGAGCaggAGGCGGCggUGCGUCcgaggaagagGCGCg -3' miRNA: 3'- -AGCUUGg--UCUGCCG--GCGCAGua--------CGCG- -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 26955 | 0.7 | 0.72234 |
Target: 5'- cUCGGccgcccGCCuGGCGcGCCGCGgcUCGUGgGCc -3' miRNA: 3'- -AGCU------UGGuCUGC-CGGCGC--AGUACgCG- -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 92893 | 0.7 | 0.72234 |
Target: 5'- --cGugCAGgcuGCGGCCGCGUgGUccGCGCa -3' miRNA: 3'- agcUugGUC---UGCCGGCGCAgUA--CGCG- -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 120112 | 0.7 | 0.702651 |
Target: 5'- cUGGGCCAGGCcauccgGGCCGCGcuUCAggGCGg -3' miRNA: 3'- aGCUUGGUCUG------CCGGCGC--AGUa-CGCg -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 93291 | 0.7 | 0.702651 |
Target: 5'- -aGGGCgGGGCGGCCGuCGcCAguaGCGUg -3' miRNA: 3'- agCUUGgUCUGCCGGC-GCaGUa--CGCG- -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 67044 | 0.7 | 0.692715 |
Target: 5'- cCGuACCGcauCGGCgGCGUCGcGCGCg -3' miRNA: 3'- aGCuUGGUcu-GCCGgCGCAGUaCGCG- -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 81412 | 0.7 | 0.692715 |
Target: 5'- gUGGGCCAGACcaaGGUC-CGUCA-GCGCc -3' miRNA: 3'- aGCUUGGUCUG---CCGGcGCAGUaCGCG- -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 100512 | 0.7 | 0.68273 |
Target: 5'- aUCGAGCCGGGCGGuauguCCGUGgacUCcgGgGCc -3' miRNA: 3'- -AGCUUGGUCUGCC-----GGCGC---AGuaCgCG- -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 41114 | 0.7 | 0.68273 |
Target: 5'- aCGGacGCCGGGCcgGGCCGa--CAUGCGCu -3' miRNA: 3'- aGCU--UGGUCUG--CCGGCgcaGUACGCG- -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 88650 | 0.7 | 0.68273 |
Target: 5'- aCGAcgcGCCcggGGACucgcgcagGGCCGCGgcCAUGCGCu -3' miRNA: 3'- aGCU---UGG---UCUG--------CCGGCGCa-GUACGCG- -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 46705 | 0.71 | 0.672704 |
Target: 5'- cUCGccCCAGACGGCC-CGUCGaGUGa -3' miRNA: 3'- -AGCuuGGUCUGCCGGcGCAGUaCGCg -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 72397 | 0.71 | 0.662646 |
Target: 5'- gCGGACUuGACGGCCGCGgcucUGCa- -3' miRNA: 3'- aGCUUGGuCUGCCGGCGCagu-ACGcg -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 25913 | 0.71 | 0.662646 |
Target: 5'- gCGGuCCGGGCGGCgUGCG-CGcGCGCg -3' miRNA: 3'- aGCUuGGUCUGCCG-GCGCaGUaCGCG- -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 138389 | 0.71 | 0.652564 |
Target: 5'- -aGAGCCAGGaccaGGaCGCGgggcaCAUGCGCu -3' miRNA: 3'- agCUUGGUCUg---CCgGCGCa----GUACGCG- -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 40557 | 0.71 | 0.651555 |
Target: 5'- gUGGGCgGGGCGugaaaauggaagcGCCGCGggucggCGUGCGCg -3' miRNA: 3'- aGCUUGgUCUGC-------------CGGCGCa-----GUACGCG- -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 127768 | 0.71 | 0.642466 |
Target: 5'- gCGGGCCuguGGCGGCCGUcUCGcgauccGCGCa -3' miRNA: 3'- aGCUUGGu--CUGCCGGCGcAGUa-----CGCG- -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 58535 | 0.71 | 0.63236 |
Target: 5'- gUGAGCU--GCGGCCuCGUCAgGCGCa -3' miRNA: 3'- aGCUUGGucUGCCGGcGCAGUaCGCG- -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 147733 | 0.71 | 0.63236 |
Target: 5'- -gGGGCC--ACGGCCGCG-CGgggGCGCg -3' miRNA: 3'- agCUUGGucUGCCGGCGCaGUa--CGCG- -5' |
|||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 71959 | 0.71 | 0.63236 |
Target: 5'- gCGGGCCcuGGGCcGCCGCG-CAUGUGUu -3' miRNA: 3'- aGCUUGG--UCUGcCGGCGCaGUACGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home