Results 61 - 80 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5649 | 3' | -56.6 | NC_001806.1 | + | 57122 | 0.68 | 0.806178 |
Target: 5'- uUUGAGCCAGGCGuauauCCGCG-CGgugggccGCGCg -3' miRNA: 3'- -AGCUUGGUCUGCc----GGCGCaGUa------CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 44397 | 0.68 | 0.806178 |
Target: 5'- aCG-ACCAGGaGGCCGCGg---GCGUu -3' miRNA: 3'- aGCuUGGUCUgCCGGCGCaguaCGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 4247 | 0.68 | 0.797364 |
Target: 5'- -aGAaggcGCCGGA-GGUCGCGUCG-GCGUc -3' miRNA: 3'- agCU----UGGUCUgCCGGCGCAGUaCGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 68580 | 0.68 | 0.796475 |
Target: 5'- gCGcACCGcGGCGGCCcuggggccgguccGCGUCcgccaGUGCGCc -3' miRNA: 3'- aGCuUGGU-CUGCCGG-------------CGCAG-----UACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 126122 | 0.68 | 0.796475 |
Target: 5'- gUGGGCCGcgcggacGACGGCgGCGaggCcgGCGCc -3' miRNA: 3'- aGCUUGGU-------CUGCCGgCGCa--GuaCGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 24027 | 0.68 | 0.792006 |
Target: 5'- gCGGGCCGGAcaCGGCCGCcugggcgggcaauugGaCcgGCGCc -3' miRNA: 3'- aGCUUGGUCU--GCCGGCG---------------CaGuaCGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 11477 | 0.68 | 0.788406 |
Target: 5'- gCGGGCCA--UGGCCGCuUCGUucaccGCGCa -3' miRNA: 3'- aGCUUGGUcuGCCGGCGcAGUA-----CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 34416 | 0.69 | 0.77931 |
Target: 5'- cCGGGCCGGGCcgGGCCGgGcCggGUGgGCg -3' miRNA: 3'- aGCUUGGUCUG--CCGGCgCaG--UACgCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 145006 | 0.69 | 0.77931 |
Target: 5'- cCGGcCCGGggccccacaACGGCCcgGCG-CAUGCGCu -3' miRNA: 3'- aGCUuGGUC---------UGCCGG--CGCaGUACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 107952 | 0.69 | 0.77931 |
Target: 5'- -gGGGCUcguGGgGGCCGUGuUUAUGCGCu -3' miRNA: 3'- agCUUGGu--CUgCCGGCGC-AGUACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 69080 | 0.69 | 0.77931 |
Target: 5'- gUCGAcgGCCcu-CaGCCGCGUCAgcccGCGCu -3' miRNA: 3'- -AGCU--UGGucuGcCGGCGCAGUa---CGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 129432 | 0.69 | 0.770085 |
Target: 5'- aCGAugCAGcaACugGGCCGCGUgGaUGCGUu -3' miRNA: 3'- aGCUugGUC--UG--CCGGCGCAgU-ACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 21982 | 0.69 | 0.770085 |
Target: 5'- gUCGAGCUGGACGccgaCGCGaccUCcgGCGCc -3' miRNA: 3'- -AGCUUGGUCUGCcg--GCGC---AGuaCGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 64890 | 0.69 | 0.769156 |
Target: 5'- aUCGGccgcaagACCAGcgcCGGCCucugGCGUCG-GCGCg -3' miRNA: 3'- -AGCU-------UGGUCu--GCCGG----CGCAGUaCGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 2934 | 0.69 | 0.760741 |
Target: 5'- cCGccuCCGGGCGGCCGgGcCGggccgggacucuUGCGCu -3' miRNA: 3'- aGCuu-GGUCUGCCGGCgCaGU------------ACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 50893 | 0.69 | 0.760741 |
Target: 5'- gCGGACUccgcGCGGCCGCGgagCAcguggaucUGCGCc -3' miRNA: 3'- aGCUUGGuc--UGCCGGCGCa--GU--------ACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 74169 | 0.69 | 0.747474 |
Target: 5'- aCGAccGCCGGuuucacguggcuuCGGCCGcCGUCGUGCcCg -3' miRNA: 3'- aGCU--UGGUCu------------GCCGGC-GCAGUACGcG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 119914 | 0.69 | 0.740766 |
Target: 5'- aCGGcCCuGACcgaGGCCugcgccgcagaacGCGUCGUGCGCc -3' miRNA: 3'- aGCUuGGuCUG---CCGG-------------CGCAGUACGCG- -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 44451 | 0.69 | 0.732076 |
Target: 5'- gCGGGCCcGGCGuCCGCGUggagCAUGCGg -3' miRNA: 3'- aGCUUGGuCUGCcGGCGCA----GUACGCg -5' |
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5649 | 3' | -56.6 | NC_001806.1 | + | 132618 | 0.69 | 0.731106 |
Target: 5'- cCGuGCCGGccACGGCCGaGUCggcacgggaccugGUGCGCg -3' miRNA: 3'- aGCuUGGUC--UGCCGGCgCAG-------------UACGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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