miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5649 3' -56.6 NC_001806.1 + 3279 0.67 0.855556
Target:  5'- aCGcGCgCAGGCgGGgCGCGUCG-GCGUg -3'
miRNA:   3'- aGCuUG-GUCUG-CCgGCGCAGUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 23059 0.67 0.855556
Target:  5'- gCGGcaGCgAGGCcGCCGUGgccgcCGUGCGCg -3'
miRNA:   3'- aGCU--UGgUCUGcCGGCGCa----GUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 145718 0.67 0.84778
Target:  5'- cCGGcCCAccUGGCCGCGcggGUGCGCg -3'
miRNA:   3'- aGCUuGGUcuGCCGGCGCag-UACGCG- -5'
5649 3' -56.6 NC_001806.1 + 52706 0.67 0.84778
Target:  5'- cCGGAgguuCCGGAgGcGCCGCG-CGgacgGCGCg -3'
miRNA:   3'- aGCUU----GGUCUgC-CGGCGCaGUa---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 20536 0.67 0.84778
Target:  5'- cCGGAUCGGGCGGUaaugagaugccaUGCGgggCGggGCGCg -3'
miRNA:   3'- aGCUUGGUCUGCCG------------GCGCa--GUa-CGCG- -5'
5649 3' -56.6 NC_001806.1 + 3090 0.67 0.84778
Target:  5'- cCGcGGCgGcGGCGGCCGCGgagcUCGgcagGCGCg -3'
miRNA:   3'- aGC-UUGgU-CUGCCGGCGC----AGUa---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 6083 0.67 0.839813
Target:  5'- gCGGGcCCGGGCGGCgGgGggcgggucucUCcgGCGCa -3'
miRNA:   3'- aGCUU-GGUCUGCCGgCgC----------AGuaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 98059 0.67 0.839813
Target:  5'- cUCGGcgACguGAUGGCCGUcuccaCGUGCGUg -3'
miRNA:   3'- -AGCU--UGguCUGCCGGCGca---GUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 114619 0.67 0.839813
Target:  5'- gUCGAuCC-GACaGCC-CGUCGUGCaGCa -3'
miRNA:   3'- -AGCUuGGuCUGcCGGcGCAGUACG-CG- -5'
5649 3' -56.6 NC_001806.1 + 112421 0.68 0.831662
Target:  5'- cCGAcacGCgCGGGCGGCCG-GUCGacgggGUGCu -3'
miRNA:   3'- aGCU---UG-GUCUGCCGGCgCAGUa----CGCG- -5'
5649 3' -56.6 NC_001806.1 + 3454 0.68 0.831662
Target:  5'- cUCGAcgGCCAcGCGGCCG-GcCuggGCGCg -3'
miRNA:   3'- -AGCU--UGGUcUGCCGGCgCaGua-CGCG- -5'
5649 3' -56.6 NC_001806.1 + 71818 0.68 0.831662
Target:  5'- -gGAGCCGGGgggguCGGUauCGUG-CAUGCGCu -3'
miRNA:   3'- agCUUGGUCU-----GCCG--GCGCaGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 66990 0.68 0.830838
Target:  5'- aCGAuCCAGGCGcGCCcccacccGCGUCccGCGg -3'
miRNA:   3'- aGCUuGGUCUGC-CGG-------CGCAGuaCGCg -5'
5649 3' -56.6 NC_001806.1 + 35550 0.68 0.823334
Target:  5'- gCGAGCCGcucGGCGcgcccggcGCCGCGccgaacgaCGUGCGCa -3'
miRNA:   3'- aGCUUGGU---CUGC--------CGGCGCa-------GUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 20658 0.68 0.823334
Target:  5'- aCGGGCCcccGGCGuGCCgGCGUCGggGCGg -3'
miRNA:   3'- aGCUUGGu--CUGC-CGG-CGCAGUa-CGCg -5'
5649 3' -56.6 NC_001806.1 + 119117 0.68 0.823334
Target:  5'- aCGcGCUAcGCGGCCgacagcacGCGcaUCAUGCGCg -3'
miRNA:   3'- aGCuUGGUcUGCCGG--------CGC--AGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 18030 0.68 0.814837
Target:  5'- cCGGugCGG-CGuCCGUGUUGUGCGUg -3'
miRNA:   3'- aGCUugGUCuGCcGGCGCAGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 46283 0.68 0.814837
Target:  5'- ----cCCAGACGcccCCGCGUCGacgGCGCc -3'
miRNA:   3'- agcuuGGUCUGCc--GGCGCAGUa--CGCG- -5'
5649 3' -56.6 NC_001806.1 + 103925 0.68 0.814837
Target:  5'- aCGAGCCGGgucacGCGGCUgacgcggaGCGUCcguUGgGCg -3'
miRNA:   3'- aGCUUGGUC-----UGCCGG--------CGCAGu--ACgCG- -5'
5649 3' -56.6 NC_001806.1 + 70965 0.68 0.80966
Target:  5'- cUCGGccgACCAGcgcgccGCGGCCauccgagagguaaugGCG-CAUGCGCc -3'
miRNA:   3'- -AGCU---UGGUC------UGCCGG---------------CGCaGUACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.