miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5649 3' -56.6 NC_001806.1 + 145718 0.67 0.84778
Target:  5'- cCGGcCCAccUGGCCGCGcggGUGCGCg -3'
miRNA:   3'- aGCUuGGUcuGCCGGCGCag-UACGCG- -5'
5649 3' -56.6 NC_001806.1 + 29958 0.67 0.870511
Target:  5'- gCGAGCCGcGGC-GCCGCGggggGCGUc -3'
miRNA:   3'- aGCUUGGU-CUGcCGGCGCaguaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 151543 0.67 0.870511
Target:  5'- gUGGGcCCGGGCGGCCGgGggcgGCGg -3'
miRNA:   3'- aGCUU-GGUCUGCCGGCgCaguaCGCg -5'
5649 3' -56.6 NC_001806.1 + 85752 0.67 0.869783
Target:  5'- -gGAGCCGcGCGGCCaCGUCGUccgggggGUGCc -3'
miRNA:   3'- agCUUGGUcUGCCGGcGCAGUA-------CGCG- -5'
5649 3' -56.6 NC_001806.1 + 144601 0.67 0.855556
Target:  5'- cCGGGCCccccugcagccgGGGCGGCCaagggGCGUCG-GCGa -3'
miRNA:   3'- aGCUUGG------------UCUGCCGG-----CGCAGUaCGCg -5'
5649 3' -56.6 NC_001806.1 + 3279 0.67 0.855556
Target:  5'- aCGcGCgCAGGCgGGgCGCGUCG-GCGUg -3'
miRNA:   3'- aGCuUG-GUCUG-CCgGCGCAGUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 86053 0.67 0.863136
Target:  5'- gCGGGCUcguccccugGGGCGGCgGCGUCuagcuCGCg -3'
miRNA:   3'- aGCUUGG---------UCUGCCGgCGCAGuac--GCG- -5'
5649 3' -56.6 NC_001806.1 + 74537 0.67 0.86611
Target:  5'- cUGGGCCAGcagcuggacagcgacGCGGCCuuuguuccuGCGcCcgGCGCg -3'
miRNA:   3'- aGCUUGGUC---------------UGCCGG---------CGCaGuaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 52706 0.67 0.84778
Target:  5'- cCGGAgguuCCGGAgGcGCCGCG-CGgacgGCGCg -3'
miRNA:   3'- aGCUU----GGUCUgC-CGGCGCaGUa---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 11477 0.68 0.788406
Target:  5'- gCGGGCCA--UGGCCGCuUCGUucaccGCGCa -3'
miRNA:   3'- aGCUUGGUcuGCCGGCGcAGUA-----CGCG- -5'
5649 3' -56.6 NC_001806.1 + 4247 0.68 0.797364
Target:  5'- -aGAaggcGCCGGA-GGUCGCGUCG-GCGUc -3'
miRNA:   3'- agCU----UGGUCUgCCGGCGCAGUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 57122 0.68 0.806178
Target:  5'- uUUGAGCCAGGCGuauauCCGCG-CGgugggccGCGCg -3'
miRNA:   3'- -AGCUUGGUCUGCc----GGCGCaGUa------CGCG- -5'
5649 3' -56.6 NC_001806.1 + 126122 0.68 0.796475
Target:  5'- gUGGGCCGcgcggacGACGGCgGCGaggCcgGCGCc -3'
miRNA:   3'- aGCUUGGU-------CUGCCGgCGCa--GuaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 46283 0.68 0.814837
Target:  5'- ----cCCAGACGcccCCGCGUCGacgGCGCc -3'
miRNA:   3'- agcuuGGUCUGCc--GGCGCAGUa--CGCG- -5'
5649 3' -56.6 NC_001806.1 + 18030 0.68 0.814837
Target:  5'- cCGGugCGG-CGuCCGUGUUGUGCGUg -3'
miRNA:   3'- aGCUugGUCuGCcGGCGCAGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 20658 0.68 0.823334
Target:  5'- aCGGGCCcccGGCGuGCCgGCGUCGggGCGg -3'
miRNA:   3'- aGCUUGGu--CUGC-CGG-CGCAGUa-CGCg -5'
5649 3' -56.6 NC_001806.1 + 119117 0.68 0.823334
Target:  5'- aCGcGCUAcGCGGCCgacagcacGCGcaUCAUGCGCg -3'
miRNA:   3'- aGCuUGGUcUGCCGG--------CGC--AGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 66990 0.68 0.830838
Target:  5'- aCGAuCCAGGCGcGCCcccacccGCGUCccGCGg -3'
miRNA:   3'- aGCUuGGUCUGC-CGG-------CGCAGuaCGCg -5'
5649 3' -56.6 NC_001806.1 + 3454 0.68 0.831662
Target:  5'- cUCGAcgGCCAcGCGGCCG-GcCuggGCGCg -3'
miRNA:   3'- -AGCU--UGGUcUGCCGGCgCaGua-CGCG- -5'
5649 3' -56.6 NC_001806.1 + 103925 0.68 0.814837
Target:  5'- aCGAGCCGGgucacGCGGCUgacgcggaGCGUCcguUGgGCg -3'
miRNA:   3'- aGCUUGGUC-----UGCCGG--------CGCAGu--ACgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.