miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5649 3' -56.6 NC_001806.1 + 62828 0.66 0.909634
Target:  5'- cCGAgaucugcGCCgAGGCGGCgGUGggCAUcaGCGCg -3'
miRNA:   3'- aGCU-------UGG-UCUGCCGgCGCa-GUA--CGCG- -5'
5649 3' -56.6 NC_001806.1 + 77131 0.66 0.909634
Target:  5'- gCGGGCCGG--GGCCGUGgaggagcUCGggggGCGCg -3'
miRNA:   3'- aGCUUGGUCugCCGGCGC-------AGUa---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 148699 0.66 0.91023
Target:  5'- gUCGAGCgcaGGugGGgCGCGaucUCAUccGUGCa -3'
miRNA:   3'- -AGCUUGg--UCugCCgGCGC---AGUA--CGCG- -5'
5649 3' -56.6 NC_001806.1 + 29847 0.66 0.891368
Target:  5'- ----cCCAGcCGGCCGCGgcUCGgacaGCGCc -3'
miRNA:   3'- agcuuGGUCuGCCGGCGC--AGUa---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 30297 0.66 0.877679
Target:  5'- -gGAGCCGGccgcccgccccGCGGaCgCGCGcCGUGUGCc -3'
miRNA:   3'- agCUUGGUC-----------UGCC-G-GCGCaGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 95469 0.66 0.91023
Target:  5'- aUCGccACgCAaGCGGCCGCGgaCGUGCGg -3'
miRNA:   3'- -AGCu-UG-GUcUGCCGGCGCa-GUACGCg -5'
5649 3' -56.6 NC_001806.1 + 134861 0.66 0.877679
Target:  5'- cUCGcaGGCCAGGCGGagcaGCGUC-UGCugGCu -3'
miRNA:   3'- -AGC--UUGGUCUGCCgg--CGCAGuACG--CG- -5'
5649 3' -56.6 NC_001806.1 + 83992 0.66 0.884632
Target:  5'- gCGAGCCGGAgGaGUCGCcGgauaCGUGgGCg -3'
miRNA:   3'- aGCUUGGUCUgC-CGGCG-Ca---GUACgCG- -5'
5649 3' -56.6 NC_001806.1 + 37809 0.66 0.884632
Target:  5'- gCGGGCgGGGgGGCaaucgccaGCGUCAUuaGCg -3'
miRNA:   3'- aGCUUGgUCUgCCGg-------CGCAGUAcgCG- -5'
5649 3' -56.6 NC_001806.1 + 24371 0.66 0.897881
Target:  5'- gCGcGCguGGaGGCCGCG-CAcGCGCg -3'
miRNA:   3'- aGCuUGguCUgCCGGCGCaGUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 3830 0.66 0.904169
Target:  5'- cCGAAgCGGcCGGCCGC--CAUGgCGUa -3'
miRNA:   3'- aGCUUgGUCuGCCGGCGcaGUAC-GCG- -5'
5649 3' -56.6 NC_001806.1 + 3090 0.67 0.84778
Target:  5'- cCGcGGCgGcGGCGGCCGCGgagcUCGgcagGCGCg -3'
miRNA:   3'- aGC-UUGgU-CUGCCGGCGC----AGUa---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 20536 0.67 0.84778
Target:  5'- cCGGAUCGGGCGGUaaugagaugccaUGCGgggCGggGCGCg -3'
miRNA:   3'- aGCUUGGUCUGCCG------------GCGCa--GUa-CGCG- -5'
5649 3' -56.6 NC_001806.1 + 52706 0.67 0.84778
Target:  5'- cCGGAgguuCCGGAgGcGCCGCG-CGgacgGCGCg -3'
miRNA:   3'- aGCUU----GGUCUgC-CGGCGCaGUa---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 56846 0.67 0.870511
Target:  5'- cCGcGGCCAgGGCGGCCGCGgCggGCcCa -3'
miRNA:   3'- aGC-UUGGU-CUGCCGGCGCaGuaCGcG- -5'
5649 3' -56.6 NC_001806.1 + 91007 0.67 0.855556
Target:  5'- gCGGGCgC-GACGGCgGCGgCAaggGCGCg -3'
miRNA:   3'- aGCUUG-GuCUGCCGgCGCaGUa--CGCG- -5'
5649 3' -56.6 NC_001806.1 + 98635 0.67 0.870511
Target:  5'- aUCGugggcGGCguGGuauCGGCCGUGUCggGCGUg -3'
miRNA:   3'- -AGC-----UUGguCU---GCCGGCGCAGuaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 85752 0.67 0.869783
Target:  5'- -gGAGCCGcGCGGCCaCGUCGUccgggggGUGCc -3'
miRNA:   3'- agCUUGGUcUGCCGGcGCAGUA-------CGCG- -5'
5649 3' -56.6 NC_001806.1 + 29958 0.67 0.870511
Target:  5'- gCGAGCCGcGGC-GCCGCGggggGCGUc -3'
miRNA:   3'- aGCUUGGU-CUGcCGGCGCaguaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 3279 0.67 0.855556
Target:  5'- aCGcGCgCAGGCgGGgCGCGUCG-GCGUg -3'
miRNA:   3'- aGCuUG-GUCUG-CCgGCGCAGUaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.