miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5649 3' -56.6 NC_001806.1 + 60000 0.72 0.581975
Target:  5'- -gGGACCcgggGGACGGCCGgGUCcggagccGCGCu -3'
miRNA:   3'- agCUUGG----UCUGCCGGCgCAGua-----CGCG- -5'
5649 3' -56.6 NC_001806.1 + 133236 0.72 0.592009
Target:  5'- gCGGGCCAucgaGACGGCCGUGggagcCGUGCu- -3'
miRNA:   3'- aGCUUGGU----CUGCCGGCGCa----GUACGcg -5'
5649 3' -56.6 NC_001806.1 + 49303 0.72 0.602071
Target:  5'- gCGAGCCcgacGACGGCgCGCGUCGgaaGCc -3'
miRNA:   3'- aGCUUGGu---CUGCCG-GCGCAGUacgCG- -5'
5649 3' -56.6 NC_001806.1 + 22173 0.72 0.612155
Target:  5'- cUCGGgcGCCccGGCGGCCGUGUgG-GCGCc -3'
miRNA:   3'- -AGCU--UGGu-CUGCCGGCGCAgUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 130556 0.72 0.612155
Target:  5'- gUCGcGCCGG-CGGaaauugUCGCGcUCAUGCGCa -3'
miRNA:   3'- -AGCuUGGUCuGCC------GGCGC-AGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 42630 0.71 0.622254
Target:  5'- cUGcGCCGcGGCGGCguCGCGUCcgGUGCg -3'
miRNA:   3'- aGCuUGGU-CUGCCG--GCGCAGuaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 71959 0.71 0.63236
Target:  5'- gCGGGCCcuGGGCcGCCGCG-CAUGUGUu -3'
miRNA:   3'- aGCUUGG--UCUGcCGGCGCaGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 147733 0.71 0.63236
Target:  5'- -gGGGCC--ACGGCCGCG-CGgggGCGCg -3'
miRNA:   3'- agCUUGGucUGCCGGCGCaGUa--CGCG- -5'
5649 3' -56.6 NC_001806.1 + 58535 0.71 0.63236
Target:  5'- gUGAGCU--GCGGCCuCGUCAgGCGCa -3'
miRNA:   3'- aGCUUGGucUGCCGGcGCAGUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 127768 0.71 0.642466
Target:  5'- gCGGGCCuguGGCGGCCGUcUCGcgauccGCGCa -3'
miRNA:   3'- aGCUUGGu--CUGCCGGCGcAGUa-----CGCG- -5'
5649 3' -56.6 NC_001806.1 + 40557 0.71 0.651555
Target:  5'- gUGGGCgGGGCGugaaaauggaagcGCCGCGggucggCGUGCGCg -3'
miRNA:   3'- aGCUUGgUCUGC-------------CGGCGCa-----GUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 138389 0.71 0.652564
Target:  5'- -aGAGCCAGGaccaGGaCGCGgggcaCAUGCGCu -3'
miRNA:   3'- agCUUGGUCUg---CCgGCGCa----GUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 25913 0.71 0.662646
Target:  5'- gCGGuCCGGGCGGCgUGCG-CGcGCGCg -3'
miRNA:   3'- aGCUuGGUCUGCCG-GCGCaGUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 72397 0.71 0.662646
Target:  5'- gCGGACUuGACGGCCGCGgcucUGCa- -3'
miRNA:   3'- aGCUUGGuCUGCCGGCGCagu-ACGcg -5'
5649 3' -56.6 NC_001806.1 + 46705 0.71 0.672704
Target:  5'- cUCGccCCAGACGGCC-CGUCGaGUGa -3'
miRNA:   3'- -AGCuuGGUCUGCCGGcGCAGUaCGCg -5'
5649 3' -56.6 NC_001806.1 + 100512 0.7 0.68273
Target:  5'- aUCGAGCCGGGCGGuauguCCGUGgacUCcgGgGCc -3'
miRNA:   3'- -AGCUUGGUCUGCC-----GGCGC---AGuaCgCG- -5'
5649 3' -56.6 NC_001806.1 + 88650 0.7 0.68273
Target:  5'- aCGAcgcGCCcggGGACucgcgcagGGCCGCGgcCAUGCGCu -3'
miRNA:   3'- aGCU---UGG---UCUG--------CCGGCGCa-GUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 41114 0.7 0.68273
Target:  5'- aCGGacGCCGGGCcgGGCCGa--CAUGCGCu -3'
miRNA:   3'- aGCU--UGGUCUG--CCGGCgcaGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 67044 0.7 0.692715
Target:  5'- cCGuACCGcauCGGCgGCGUCGcGCGCg -3'
miRNA:   3'- aGCuUGGUcu-GCCGgCGCAGUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 81412 0.7 0.692715
Target:  5'- gUGGGCCAGACcaaGGUC-CGUCA-GCGCc -3'
miRNA:   3'- aGCUUGGUCUG---CCGGcGCAGUaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.