miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5649 3' -56.6 NC_001806.1 + 93291 0.7 0.702651
Target:  5'- -aGGGCgGGGCGGCCGuCGcCAguaGCGUg -3'
miRNA:   3'- agCUUGgUCUGCCGGC-GCaGUa--CGCG- -5'
5649 3' -56.6 NC_001806.1 + 120112 0.7 0.702651
Target:  5'- cUGGGCCAGGCcauccgGGCCGCGcuUCAggGCGg -3'
miRNA:   3'- aGCUUGGUCUG------CCGGCGC--AGUa-CGCg -5'
5649 3' -56.6 NC_001806.1 + 92893 0.7 0.72234
Target:  5'- --cGugCAGgcuGCGGCCGCGUgGUccGCGCa -3'
miRNA:   3'- agcUugGUC---UGCCGGCGCAgUA--CGCG- -5'
5649 3' -56.6 NC_001806.1 + 26955 0.7 0.72234
Target:  5'- cUCGGccgcccGCCuGGCGcGCCGCGgcUCGUGgGCc -3'
miRNA:   3'- -AGCU------UGGuCUGC-CGGCGC--AGUACgCG- -5'
5649 3' -56.6 NC_001806.1 + 30502 0.7 0.72234
Target:  5'- gUCGAGCaggAGGCGGCggUGCGUCcgaggaagagGCGCg -3'
miRNA:   3'- -AGCUUGg--UCUGCCG--GCGCAGua--------CGCG- -5'
5649 3' -56.6 NC_001806.1 + 112681 0.7 0.72234
Target:  5'- cUCGAGagcgccccCCAGACGa-CGCG-CGUGCGCg -3'
miRNA:   3'- -AGCUU--------GGUCUGCcgGCGCaGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 132618 0.69 0.731106
Target:  5'- cCGuGCCGGccACGGCCGaGUCggcacgggaccugGUGCGCg -3'
miRNA:   3'- aGCuUGGUC--UGCCGGCgCAG-------------UACGCG- -5'
5649 3' -56.6 NC_001806.1 + 44451 0.69 0.732076
Target:  5'- gCGGGCCcGGCGuCCGCGUggagCAUGCGg -3'
miRNA:   3'- aGCUUGGuCUGCcGGCGCA----GUACGCg -5'
5649 3' -56.6 NC_001806.1 + 119914 0.69 0.740766
Target:  5'- aCGGcCCuGACcgaGGCCugcgccgcagaacGCGUCGUGCGCc -3'
miRNA:   3'- aGCUuGGuCUG---CCGG-------------CGCAGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 74169 0.69 0.747474
Target:  5'- aCGAccGCCGGuuucacguggcuuCGGCCGcCGUCGUGCcCg -3'
miRNA:   3'- aGCU--UGGUCu------------GCCGGC-GCAGUACGcG- -5'
5649 3' -56.6 NC_001806.1 + 50893 0.69 0.760741
Target:  5'- gCGGACUccgcGCGGCCGCGgagCAcguggaucUGCGCc -3'
miRNA:   3'- aGCUUGGuc--UGCCGGCGCa--GU--------ACGCG- -5'
5649 3' -56.6 NC_001806.1 + 2934 0.69 0.760741
Target:  5'- cCGccuCCGGGCGGCCGgGcCGggccgggacucuUGCGCu -3'
miRNA:   3'- aGCuu-GGUCUGCCGGCgCaGU------------ACGCG- -5'
5649 3' -56.6 NC_001806.1 + 64890 0.69 0.769156
Target:  5'- aUCGGccgcaagACCAGcgcCGGCCucugGCGUCG-GCGCg -3'
miRNA:   3'- -AGCU-------UGGUCu--GCCGG----CGCAGUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 129432 0.69 0.770085
Target:  5'- aCGAugCAGcaACugGGCCGCGUgGaUGCGUu -3'
miRNA:   3'- aGCUugGUC--UG--CCGGCGCAgU-ACGCG- -5'
5649 3' -56.6 NC_001806.1 + 21982 0.69 0.770085
Target:  5'- gUCGAGCUGGACGccgaCGCGaccUCcgGCGCc -3'
miRNA:   3'- -AGCUUGGUCUGCcg--GCGC---AGuaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 107952 0.69 0.77931
Target:  5'- -gGGGCUcguGGgGGCCGUGuUUAUGCGCu -3'
miRNA:   3'- agCUUGGu--CUgCCGGCGC-AGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 34416 0.69 0.77931
Target:  5'- cCGGGCCGGGCcgGGCCGgGcCggGUGgGCg -3'
miRNA:   3'- aGCUUGGUCUG--CCGGCgCaG--UACgCG- -5'
5649 3' -56.6 NC_001806.1 + 69080 0.69 0.77931
Target:  5'- gUCGAcgGCCcu-CaGCCGCGUCAgcccGCGCu -3'
miRNA:   3'- -AGCU--UGGucuGcCGGCGCAGUa---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 145006 0.69 0.77931
Target:  5'- cCGGcCCGGggccccacaACGGCCcgGCG-CAUGCGCu -3'
miRNA:   3'- aGCUuGGUC---------UGCCGG--CGCaGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 11477 0.68 0.788406
Target:  5'- gCGGGCCA--UGGCCGCuUCGUucaccGCGCa -3'
miRNA:   3'- aGCUUGGUcuGCCGGCGcAGUA-----CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.