miRNA display CGI


Results 21 - 40 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5649 3' -56.6 NC_001806.1 + 21560 0.66 0.904169
Target:  5'- cCGGACCccACGGaCCGCcuGUCGccGCGCc -3'
miRNA:   3'- aGCUUGGucUGCC-GGCG--CAGUa-CGCG- -5'
5649 3' -56.6 NC_001806.1 + 21982 0.69 0.770085
Target:  5'- gUCGAGCUGGACGccgaCGCGaccUCcgGCGCc -3'
miRNA:   3'- -AGCUUGGUCUGCcg--GCGC---AGuaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 22173 0.72 0.612155
Target:  5'- cUCGGgcGCCccGGCGGCCGUGUgG-GCGCc -3'
miRNA:   3'- -AGCU--UGGu-CUGCCGGCGCAgUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 22202 0.66 0.904169
Target:  5'- cCGAGCUGGGCGacGCCGCGcagCAguaCGCc -3'
miRNA:   3'- aGCUUGGUCUGC--CGGCGCa--GUac-GCG- -5'
5649 3' -56.6 NC_001806.1 + 23059 0.67 0.855556
Target:  5'- gCGGcaGCgAGGCcGCCGUGgccgcCGUGCGCg -3'
miRNA:   3'- aGCU--UGgUCUGcCGGCGCa----GUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 24027 0.68 0.792006
Target:  5'- gCGGGCCGGAcaCGGCCGCcugggcgggcaauugGaCcgGCGCc -3'
miRNA:   3'- aGCUUGGUCU--GCCGGCG---------------CaGuaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 24371 0.66 0.897881
Target:  5'- gCGcGCguGGaGGCCGCG-CAcGCGCg -3'
miRNA:   3'- aGCuUGguCUgCCGGCGCaGUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 25913 0.71 0.662646
Target:  5'- gCGGuCCGGGCGGCgUGCG-CGcGCGCg -3'
miRNA:   3'- aGCUuGGUCUGCCG-GCGCaGUaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 26955 0.7 0.72234
Target:  5'- cUCGGccgcccGCCuGGCGcGCCGCGgcUCGUGgGCc -3'
miRNA:   3'- -AGCU------UGGuCUGC-CGGCGC--AGUACgCG- -5'
5649 3' -56.6 NC_001806.1 + 29847 0.66 0.891368
Target:  5'- ----cCCAGcCGGCCGCGgcUCGgacaGCGCc -3'
miRNA:   3'- agcuuGGUCuGCCGGCGC--AGUa---CGCG- -5'
5649 3' -56.6 NC_001806.1 + 29958 0.67 0.870511
Target:  5'- gCGAGCCGcGGC-GCCGCGggggGCGUc -3'
miRNA:   3'- aGCUUGGU-CUGcCGGCGCaguaCGCG- -5'
5649 3' -56.6 NC_001806.1 + 30182 0.75 0.447726
Target:  5'- cCGGGCCccccgcguccGCGGCCGCGUCGggacccGCGCg -3'
miRNA:   3'- aGCUUGGuc--------UGCCGGCGCAGUa-----CGCG- -5'
5649 3' -56.6 NC_001806.1 + 30219 0.66 0.877679
Target:  5'- nCGcccCCGcGCGGCCGUGgcccCGUGCGUg -3'
miRNA:   3'- aGCuu-GGUcUGCCGGCGCa---GUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 30297 0.66 0.877679
Target:  5'- -gGAGCCGGccgcccgccccGCGGaCgCGCGcCGUGUGCc -3'
miRNA:   3'- agCUUGGUC-----------UGCC-G-GCGCaGUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 30502 0.7 0.72234
Target:  5'- gUCGAGCaggAGGCGGCggUGCGUCcgaggaagagGCGCg -3'
miRNA:   3'- -AGCUUGg--UCUGCCG--GCGCAGua--------CGCG- -5'
5649 3' -56.6 NC_001806.1 + 34416 0.69 0.77931
Target:  5'- cCGGGCCGGGCcgGGCCGgGcCggGUGgGCg -3'
miRNA:   3'- aGCUUGGUCUG--CCGGCgCaG--UACgCG- -5'
5649 3' -56.6 NC_001806.1 + 35550 0.68 0.823334
Target:  5'- gCGAGCCGcucGGCGcgcccggcGCCGCGccgaacgaCGUGCGCa -3'
miRNA:   3'- aGCUUGGU---CUGC--------CGGCGCa-------GUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 37809 0.66 0.884632
Target:  5'- gCGGGCgGGGgGGCaaucgccaGCGUCAUuaGCg -3'
miRNA:   3'- aGCUUGgUCUgCCGg-------CGCAGUAcgCG- -5'
5649 3' -56.6 NC_001806.1 + 40557 0.71 0.651555
Target:  5'- gUGGGCgGGGCGugaaaauggaagcGCCGCGggucggCGUGCGCg -3'
miRNA:   3'- aGCUUGgUCUGC-------------CGGCGCa-----GUACGCG- -5'
5649 3' -56.6 NC_001806.1 + 41114 0.7 0.68273
Target:  5'- aCGGacGCCGGGCcgGGCCGa--CAUGCGCu -3'
miRNA:   3'- aGCU--UGGUCUG--CCGGCgcaGUACGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.